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Sample GSM33893 Query DataSets for GSM33893
Status Public on Oct 28, 2004
Title HCC073_Cy5
Sample type RNA
 
Channel 1
Source name HCC073
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 41008

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC073
Sample_Description: subgroup A
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 -0.733 0.602 1 1 1 834 287 122 107 1525 371 257 119 0
1174364_1 0.010 1.007 1 1 2 3492 833 124 119 3833 731 249 120 0
1175152_1 -0.600 0.660 1 1 3 625 226 122 112 1052 272 235 92 0
1175940_1 -0.290 0.818 1 1 4 945 320 130 107 1311 283 243 101 0
1176716_1 0.123 1.089 1 1 5 2032 491 123 118 2120 518 241 158 0
1177504_1 -0.355 0.782 1 1 6 1220 362 120 99 1753 406 245 151 0
1178580_1 0.428 1.345 1 1 7 3788 812 124 86 3172 654 253 106 0
1179356_1 -0.572 0.673 1 1 8 637 187 126 115 1060 213 246 126 0
1180144_1 0.156 1.114 1 1 9 1352 412 128 93 1417 363 240 101 0
1180932_1 -0.728 0.604 1 1 10 480 222 129 79 867 267 244 175 0
1181708_1 -1.020 0.493 1 1 11 409 211 133 121 862 303 262 188 0
1182496_1 -0.919 0.529 1 1 12 406 175 137 108 812 184 267 164 0
1183572_1 0.067 1.048 1 1 13 1186 362 129 109 1339 342 258 138 0
1184348_1 -0.742 0.598 1 1 14 442 215 119 111 825 259 246 126 0
1185136_1 -0.793 0.577 1 1 15 192 134 129 99 369 234 252 123 -50
1185924_1 -0.746 0.596 1 1 16 441 184 130 102 825 227 266 135 0
1186700_1 -0.684 0.623 1 1 17 714 326 126 95 1261 394 249 103 0
1187488_1 0.157 1.115 1 1 18 746 369 133 93 838 248 249 88 0
1188564_1 0.611 1.527 1 1 19 7714 1780 136 110 5574 1186 256 109 0
1189340_1 -0.180 0.883 1 1 20 870 294 132 245 1148 263 252 92 0

Total number of rows: 21794

Table truncated, full table size 1366 Kbytes.




Supplementary data files not provided

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