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Sample GSM33895

Query DataSets for GSM33895

Status

Public on Oct 28, 2004

Title

HCC074_Cy5

Sample type

RNA

Channel 1

Source name

HCC074

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 41012

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC074
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.181	0.882	1	1	1	1316	537	143	99	1801	577	328	107	0
1174364_1	-0.139	0.908	1	1	2	10969	3081	141	91	13515	3491	305	98	0
1175152_1	0.199	1.148	1	1	3	1188	417	136	83	1310	380	295	88	0
1175940_1	0.787	1.725	1	1	4	2915	602	132	69	2090	427	303	95	0
1176716_1	0.354	1.278	1	1	5	3265	552	136	74	3026	546	314	117	0
1177504_1	-0.105	0.929	1	1	6	1933	411	145	85	2443	341	312	99	0
1178580_1	0.369	1.292	1	1	7	5263	1219	143	112	4693	939	302	90	0
1179356_1	0.006	1.004	1	1	8	807	290	137	117	1039	227	300	98	0
1180144_1	0.718	1.645	1	1	9	2323	721	133	303	1789	477	314	167	0
1180932_1	-0.584	0.667	1	1	10	435	209	129	322	825	202	317	172	0
1181708_1	0.112	1.081	1	1	11	655	300	135	74	846	306	313	97	0
1182496_1	-2.005	0.249	1	1	12	208	104	141	86	605	137	307	104	0
1183572_1	-0.258	0.836	1	1	13	875	316	132	87	1294	338	310	112	0
1184348_1	-0.235	0.850	1	1	14	386	203	136	90	637	151	311	106	0
1185136_1	-1.014	0.495	1	1	15	198	117	139	89	443	238	311	95	-50
1185924_1	-0.205	0.868	1	1	16	467	232	138	230	728	187	308	373	0
1186700_1	0.034	1.024	1	1	17	768	425	133	261	1001	353	314	360	0
1187488_1	0.132	1.096	1	1	18	495	351	134	214	684	213	319	99	0
1188564_1	0.591	1.506	1	1	19	6707	2876	135	178	5172	2184	337	121	0
1189340_1	1.099	2.142	1	1	20	2365	716	143	96	1479	399	330	107	0

Total number of rows: 21794

Table truncated, full table size 1374 Kbytes.

Supplementary data files not provided

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