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Sample GSM33896

Query DataSets for GSM33896

Status

Public on Oct 28, 2004

Title

HCC075_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC075

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 38940

Array Print: Hs-OperonV2-vB1.1p3-013003
Tissue_type: Hepatocellular Carcinoma
Sample: HCC075
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.338	1.264	1	1	1	2167	535	127	80	2004	317	228	55	0
1174364_1	-0.062	0.958	1	1	2	7732	1021	126	65	8959	1052	223	45	0
1175152_1	0.227	1.170	1	1	3	1379	273	123	48	1413	270	232	53	0
1175940_1	0.110	1.079	1	1	4	2111	357	125	52	2263	408	237	53	0
1176716_1	0.304	1.235	1	1	5	3220	736	121	48	2976	701	214	44	0
1177504_1	0.417	1.335	1	1	6	2209	683	116	45	1940	509	215	40	0
1178580_1	0.633	1.550	1	1	7	14485	4132	121	59	10415	2726	218	41	0
1179356_1	0.203	1.151	1	1	8	1172	265	120	44	1211	304	205	40	0
1180144_1	-0.313	0.805	1	1	9	1628	392	121	48	2272	480	211	46	0
1180932_1	0.249	1.188	1	1	10	757	262	120	42	802	205	212	52	0
1181708_1	0.247	1.187	1	1	11	823	286	119	54	868	246	215	66	0
1182496_1	0.123	1.089	1	1	12	696	289	126	47	788	275	212	42	0
1183572_1	0.134	1.097	1	1	13	1885	392	127	51	1983	397	220	43	0
1184348_1	0.036	1.025	1	1	14	1006	287	120	42	1170	312	219	42	0
1185136_1	0.058	1.041	1	1	15	1610	393	118	44	1789	393	212	38	0
1185924_1	-0.056	0.962	1	1	16	944	234	120	48	1162	219	219	47	0
1186700_1	0.253	1.192	1	1	17	1731	479	125	56	1700	378	217	44	0
1187488_1	0.173	1.128	1	1	18	790	257	125	56	866	237	217	55	0
1188564_1	-0.181	0.882	1	1	19	3537	615	124	59	4478	719	219	54	0
1189340_1	-0.633	0.645	1	1	20	1113	331	125	45	1907	417	221	42	0

Total number of rows: 21794

Table truncated, full table size 1347 Kbytes.

Supplementary data files not provided

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