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Sample GSM33898

Query DataSets for GSM33898

Status

Public on Oct 28, 2004

Title

HCC076_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC076

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 41017

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC076
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.859	1.814	1	1	1	2090	573	204	126	1528	392	252	98	0
1174364_1	1.287	2.439	1	1	2	15509	3326	201	178	7947	2062	245	98	0
1175152_1	-0.208	0.866	1	1	3	1268	425	222	162	1730	448	247	95	0
1175940_1	0.538	1.452	1	1	4	2286	782	219	124	1983	470	236	88	0
1176716_1	0.281	1.215	1	1	5	4360	745	218	132	4434	853	250	111	0
1177504_1	1.087	2.124	1	1	6	3065	642	215	124	1899	365	252	102	0
1178580_1	0.351	1.276	1	1	7	5272	1176	219	107	5105	1046	243	77	0
1179356_1	0.088	1.063	1	1	8	1085	387	214	121	1251	340	245	91	0
1180144_1	-0.594	0.663	1	1	9	1906	623	213	128	3379	967	243	103	0
1180932_1	0.003	1.002	1	1	10	612	278	207	132	743	245	247	94	0
1181708_1	-0.003	0.998	1	1	11	732	338	211	122	894	370	253	103	0
1182496_1	-0.870	0.547	1	1	12	344	177	212	112	528	149	232	82	0
1183572_1	0.362	1.285	1	1	13	1878	451	217	134	1825	448	239	82	0
1184348_1	-0.327	0.797	1	1	14	558	341	226	135	759	257	248	90	0
1185136_1	-0.100	0.933	1	1	15	317	196	222	112	373	252	248	82	-50
1185924_1	0.097	1.070	1	1	16	717	268	215	111	825	272	249	85	0
1186700_1	0.513	1.427	1	1	17	1092	446	220	123	1002	378	252	88	0
1187488_1	-0.801	0.574	1	1	18	508	235	219	143	879	399	261	102	0
1188564_1	-0.180	0.883	1	1	19	8771	2888	238	173	12133	3680	267	186	0
1189340_1	-0.324	0.799	1	1	20	1591	448	270	369	2319	620	289	608	0

Total number of rows: 21794

Table truncated, full table size 1388 Kbytes.

Supplementary data files not provided

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