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Sample GSM33900

Query DataSets for GSM33900

Status

Public on Oct 28, 2004

Title

HCC077_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC077

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 41021

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC077
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.907	1.875	1	1	1	8947	3164	205	839	5573	1764	301	456	0
1174364_1	1.419	2.674	1	1	2	13817	4499	194	787	6042	2116	280	458	0
1175152_1	0.802	1.744	1	1	3	4884	1423	188	108	3293	1148	248	82	0
1175940_1	0.748	1.680	1	1	4	7085	1761	192	107	4886	1155	246	100	0
1176716_1	0.495	1.409	1	1	5	4749	1127	193	100	3913	796	256	103	0
1177504_1	0.419	1.337	1	1	6	4271	829	185	98	3697	660	240	81	0
1178580_1	0.553	1.467	1	1	7	6703	1451	182	99	5269	1057	242	78	0
1179356_1	0.790	1.729	1	1	8	3098	1051	194	96	2145	736	246	89	0
1180144_1	0.119	1.086	1	1	9	2766	1321	192	97	2924	991	244	93	0
1180932_1	0.366	1.289	1	1	10	1118	518	187	143	1069	475	252	101	0
1181708_1	0.758	1.691	1	1	11	1440	745	175	96	1100	405	254	89	0
1182496_1	0.286	1.219	1	1	12	1110	721	183	94	1111	501	251	82	0
1183572_1	0.401	1.320	1	1	13	1795	599	185	112	1637	542	258	87	0
1184348_1	0.213	1.159	1	1	14	1043	601	182	124	1100	483	260	83	0
1185136_1	-0.022	0.985	1	1	15	372	355	183	118	478	394	261	86	-50
1185924_1	0.397	1.317	1	1	16	952	591	180	108	917	357	254	104	0
1186700_1	0.496	1.410	1	1	17	1631	649	188	95	1438	397	281	104	0
1187488_1	-0.495	0.710	1	1	18	742	420	191	106	1144	458	266	90	0
1188564_1	0.377	1.298	1	1	19	8689	1936	188	104	7667	1865	263	76	0
1189340_1	0.657	1.577	1	1	20	1587	652	186	101	1268	413	263	83	0

Total number of rows: 21794

Table truncated, full table size 1379 Kbytes.

Supplementary data files not provided

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