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Sample GSM33909

Query DataSets for GSM33909

Status

Public on Oct 28, 2004

Title

HCC081_Cy5

Sample type

RNA

Channel 1

Source name

HCC081

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42222

Array Print: Hs-OperonV2-vB1.1p8-041403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC081
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.019	0.987	1	1	1	7227	2342	207	138	7447	1976	176	161	0
1174364_1	0.771	1.707	1	1	2	32759	4904	242	155	19727	3311	249	127	0
1175152_1	0.347	1.272	1	1	3	3193	1118	282	179	2635	857	296	158	0
1175940_1	0.024	1.017	1	1	4	3680	735	292	617	3728	841	323	256	0
1176716_1	0.361	1.284	1	1	5	7991	1390	257	505	6409	1299	252	206	0
1177504_1	-0.158	0.896	1	1	6	2516	674	255	160	2821	489	242	121	0
1178580_1	0.312	1.242	1	1	7	10588	2687	278	222	8786	2165	298	197	0
1179356_1	-0.067	0.955	1	1	8	2880	855	296	207	3102	794	335	214	0
1180144_1	-0.288	0.819	1	1	9	3099	840	236	161	3801	1017	227	138	0
1180932_1	0.030	1.021	1	1	10	1166	433	235	248	1168	355	236	274	0
1181708_1	-0.085	0.943	1	1	11	999	459	225	135	1077	331	238	103	0
1182496_1	-0.236	0.849	1	1	12	784	533	221	166	915	411	237	126	0
1183572_1	0.501	1.415	1	1	13	6652	1363	223	175	4859	1083	216	117	0
1184348_1	0.441	1.357	1	1	14	1299	611	250	174	1010	341	220	112	0
1185136_1	0.243	1.184	1	1	15	305	200	239	145	283	195	226	103	-50
1185924_1	0.123	1.089	1	1	16	1398	408	229	155	1322	444	225	101	0
1186700_1	0.068	1.048	1	1	17	1789	667	204	166	1755	525	209	108	0
1187488_1	0.640	1.558	1	1	18	1212	440	209	169	881	417	223	114	0
1188564_1	0.539	1.453	1	1	19	15499	2494	210	184	10982	2177	228	139	0
1189340_1	0.678	1.600	1	1	20	4060	1192	212	172	2677	783	219	115	0

Total number of rows: 21794

Table truncated, full table size 1398 Kbytes.

Supplementary data files not provided

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