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Sample GSM33911

Query DataSets for GSM33911

Status

Public on Oct 28, 2004

Title

HCC082_Cy5

Sample type

RNA

Channel 1

Source name

HCC082

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42227

Array Print: Hs-OperonV2-vB1.1p8-041403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC082
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.115	0.924	1	1	1	1647	515	200	134	2004	691	152	113	0
1174364_1	-0.570	0.673	1	1	2	3553	1456	206	137	6035	2011	160	129	0
1175152_1	-0.332	0.794	1	1	3	553	248	184	124	694	240	145	149	0
1175940_1	-0.053	0.964	1	1	4	880	623	182	110	1000	520	144	141	0
1176716_1	0.130	1.094	1	1	5	1301	357	194	135	1351	456	155	159	0
1177504_1	-1.083	0.472	1	1	6	492	213	184	143	922	195	151	144	0
1178580_1	-0.163	0.893	1	1	7	2016	547	197	262	2566	653	159	338	0
1179356_1	0.296	1.228	1	1	8	834	254	193	138	779	216	162	300	0
1180144_1	0.126	1.091	1	1	9	1342	1677	199	389	1421	896	183	108	0
1180932_1	0.317	1.246	1	1	10	466	245	212	130	438	154	197	198	0
1181708_1	-0.256	0.837	1	1	11	358	161	188	155	438	165	198	268	0
1182496_1	-0.385	0.766	1	1	12	266	141	209	130	254	101	166	134	-50
1183572_1	-0.221	0.858	1	1	13	1122	455	206	137	1445	553	183	78	0
1184348_1	0.151	1.110	1	1	14	451	252	235	137	394	129	164	76	0
1185136_1	-0.743	0.597	1	1	15	253	121	207	142	242	153	151	115	-50
1185924_1	-0.653	0.636	1	1	16	405	217	186	144	547	186	140	79	0
1186700_1	-0.338	0.791	1	1	17	518	268	196	212	632	270	151	314	0
1187488_1	-0.616	0.652	1	1	18	317	136	179	229	388	164	138	246	0
1188564_1	-0.287	0.820	1	1	19	3763	750	175	208	5313	872	138	139	0
1189340_1	0.101	1.072	1	1	20	1136	359	179	104	1193	393	138	149	0

Total number of rows: 21794

Table truncated, full table size 1369 Kbytes.

Supplementary data files not provided

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