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Sample GSM33915

Query DataSets for GSM33915

Status

Public on Oct 28, 2004

Title

HCC084_Cy5

Sample type

RNA

Channel 1

Source name

HCC084

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42237

Array Print: Hs-OperonV2-vB1.1p8-041403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC084
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	5.676	51.134	1	1	1	305	270	260	191	274	117	279	207	-50
1174364_1	-0.343	0.789	1	1	2	7228	1120	278	184	10290	2432	276	195	0
1175152_1	-0.050	0.966	1	1	3	1125	348	259	183	1302	350	283	168	0
1175940_1	0.643	1.562	1	1	4	1878	446	260	158	1432	380	255	171	0
1176716_1	0.458	1.373	1	1	5	3244	1306	267	158	2730	602	267	188	0
1177504_1	-0.019	0.987	1	1	6	1585	388	290	279	1802	511	311	334	0
1178580_1	0.447	1.364	1	1	7	5812	988	303	483	4885	976	294	361	0
1179356_1	0.686	1.608	1	1	8	1611	1287	255	352	1214	350	256	170	0
1180144_1	0.651	1.570	1	1	9	2606	534	262	249	1984	435	288	334	0
1180932_1	-0.074	0.950	1	1	10	961	1192	232	235	1140	1006	268	367	0
1181708_1	-0.771	0.586	1	1	11	545	269	200	176	895	278	226	248	0
1182496_1	-0.629	0.647	1	1	12	441	234	210	156	630	199	224	143	0
1183572_1	0.107	1.077	1	1	13	2168	571	208	147	2273	514	205	126	0
1184348_1	-0.480	0.717	1	1	14	568	388	238	165	803	319	280	147	0
1185136_1	-5.064	0.030	1	1	15	176	87	194	180	254	157	216	218	-50
1185924_1	-0.089	0.940	1	1	16	862	381	190	155	1021	452	209	143	0
1186700_1	-0.186	0.879	1	1	17	834	258	165	638	1048	307	183	202	0
1187488_1	-0.154	0.899	1	1	18	591	225	160	101	727	201	182	94	0
1188564_1	-0.357	0.781	1	1	19	3880	881	166	107	5599	1246	192	85	0
1189340_1	-0.129	0.914	1	1	20	1172	467	159	106	1448	441	189	93	0

Total number of rows: 21794

Table truncated, full table size 1371 Kbytes.

Supplementary data files not provided

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