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Sample GSM33917

Query DataSets for GSM33917

Status

Public on Oct 28, 2004

Title

HCC085_Cy5

Sample type

RNA

Channel 1

Source name

HCC085

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42241

Array Print: Hs-OperonV2-vB1.1p8-041403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC085
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-1.267	0.416	1	1	1	173	104	156	90	196	127	151	96	-50
1174364_1	-0.542	0.687	1	1	2	6302	1258	181	158	9993	1418	189	236	0
1175152_1	0.516	1.430	1	1	3	1167	377	161	119	948	249	174	178	0
1175940_1	0.000	1.000	1	1	4	1177	353	147	81	1275	761	142	75	0
1176716_1	0.117	1.084	1	1	5	2519	559	152	90	2541	473	140	99	0
1177504_1	-0.340	0.790	1	1	6	1034	244	153	101	1373	313	146	97	0
1178580_1	0.211	1.157	1	1	7	4446	722	153	94	4230	854	150	63	0
1179356_1	0.013	1.009	1	1	8	965	281	146	83	1034	257	141	70	0
1180144_1	0.551	1.465	1	1	9	2169	513	144	87	1659	436	139	80	0
1180932_1	-0.291	0.817	1	1	10	430	201	135	95	541	178	144	74	0
1181708_1	-0.904	0.535	1	1	11	382	163	157	90	599	217	136	65	0
1182496_1	-1.146	0.452	1	1	12	287	132	151	82	462	160	131	57	0
1183572_1	0.647	1.566	1	1	13	3284	778	157	80	2339	590	143	66	0
1184348_1	-0.121	0.920	1	1	14	457	207	141	82	519	202	141	68	0
1185136_1	0.253	1.192	1	1	15	203	129	138	78	196	122	136	58	-50
1185924_1	-0.185	0.879	1	1	16	748	278	150	88	885	292	137	56	0
1186700_1	0.135	1.098	1	1	17	834	246	142	96	828	270	135	63	0
1187488_1	0.138	1.100	1	1	18	493	226	146	86	478	200	131	64	0
1188564_1	0.352	1.277	1	1	19	7953	1056	158	88	6847	1022	131	63	0
1189340_1	-0.267	0.831	1	1	20	1065	350	147	75	1346	354	131	67	0

Total number of rows: 21794

Table truncated, full table size 1360 Kbytes.

Supplementary data files not provided

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