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Sample GSM33918

Query DataSets for GSM33918

Status

Public on Oct 28, 2004

Title

HCC086_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC086

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42671

Array Print: Hs-OperonV2-vW1.1p10-042903
Tissue_type: Hepatocellular Carcinoma
Sample: HCC086
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1174261_1	-0.089	0.940	1	1	2	1003	486	188	192	1273	386	223	136	0
1175033_1	0.362	1.285	1	1	3	1761	632	200	193	1690	502	218	136	0
1175841_1	0.093	1.067	1	1	4	980	515	199	133	1105	469	218	106	0
1176613_1	-0.198	0.871	1	1	5	801	389	209	130	1031	396	208	115	0
1177385_1	-0.558	0.679	1	1	6	1493	547	209	125	2501	703	211	127	0
1179253_1	-0.754	0.593	1	1	8	5012	913	200	355	10053	2028	220	407	0
1180025_1	0.564	1.478	1	1	9	1713	513	189	360	1462	544	213	423	0
1180833_1	0.175	1.129	1	1	10	2136	1218	189	175	2311	986	222	159	0
1181605_1	0.412	1.331	1	1	11	1266	570	205	130	1192	448	226	132	0
1182377_1	0.682	1.605	1	1	12	5370	1327	197	142	4124	1178	218	115	0
1184245_1	-0.198	0.872	1	1	14	934	378	200	129	1230	388	210	118	0
1185017_1	-0.321	0.801	1	1	15	390	359	201	155	495	295	209	122	-50
1185825_1	0.569	1.484	1	1	16	708	326	196	153	619	267	201	141	0
1186597_1	0.145	1.106	1	1	17	2679	895	195	115	2928	944	207	103	0
1187369_1	0.054	1.038	1	1	18	861	497	201	131	981	484	211	105	0
1189237_1	0.743	1.673	1	1	20	1375	585	194	125	1064	485	209	123	0
1190009_1	-0.342	0.789	1	1	21	1001	354	185	129	1459	362	206	102	0
1190817_1	0.248	1.188	1	1	22	591	323	190	150	610	265	201	124	0
1191589_1	0.024	1.017	1	1	23	1702	631	193	120	2000	704	202	105	0
1192361_1	-0.389	0.764	1	1	24	407	289	199	141	543	309	213	113	0

Total number of rows: 21794

Table truncated, full table size 1389 Kbytes.

Supplementary data files not provided

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