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Sample GSM33920

Query DataSets for GSM33920

Status

Public on Oct 28, 2004

Title

HCC087_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC087

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42675

Array Print: Hs-OperonV2-vW1.1p10-042903
Tissue_type: Hepatocellular Carcinoma
Sample: HCC087
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1174261_1	-0.008	0.994	1	1	2	2975	1183	264	161	3329	1173	290	128	0
1175033_1	0.410	1.328	1	1	3	9942	2203	263	171	8423	1620	300	136	0
1175841_1	0.659	1.579	1	1	4	6473	2392	270	178	4680	2335	301	164	0
1176613_1	0.412	1.331	1	1	5	10667	2314	276	198	9001	2007	295	191	0
1177385_1	0.290	1.223	1	1	6	4788	1338	260	171	4435	1020	306	179	0
1179253_1	0.055	1.039	1	1	8	11503	1799	255	157	12363	1459	291	146	0
1180025_1	0.528	1.442	1	1	9	8304	2015	258	252	6499	1618	277	161	0
1180833_1	0.859	1.813	1	1	10	8013	2572	254	293	5066	1760	296	198	0
1181605_1	0.548	1.462	1	1	11	5571	1474	256	182	4332	1088	280	158	0
1182377_1	0.660	1.580	1	1	12	10373	1876	239	158	7436	1474	284	140	0
1184245_1	0.179	1.132	1	1	14	2812	738	223	140	2811	686	261	118	0
1185017_1	0.671	1.593	1	1	15	1193	842	233	149	941	557	269	131	0
1185825_1	-0.238	0.848	1	1	16	1175	659	239	143	1508	577	277	123	0
1186597_1	0.115	1.083	1	1	17	4503	1494	237	144	4656	1217	266	115	0
1187369_1	-0.649	0.638	1	1	18	782	295	234	135	1221	406	263	129	0
1189237_1	-0.303	0.810	1	1	20	1551	741	247	160	2050	790	256	141	0
1190009_1	0.564	1.479	1	1	21	1240	490	244	131	1013	401	262	119	0
1190817_1	0.291	1.223	1	1	22	904	498	238	130	885	371	278	114	0
1191589_1	-0.692	0.619	1	1	23	1915	912	251	154	3275	874	279	131	0
1192361_1	0.636	1.555	1	1	24	531	335	280	253	473	241	293	184	0

Total number of rows: 21794

Table truncated, full table size 1416 Kbytes.

Supplementary data files not provided

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