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Sample GSM33922

Query DataSets for GSM33922

Status

Public on Oct 28, 2004

Title

HCC088_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC088

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 42679

Array Print: Hs-OperonV2-vW1.1p10-042903
Tissue_type: Hepatocellular Carcinoma
Sample: HCC088
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1174261_1	-0.012	0.992	1	1	2	2181	670	213	136	2857	736	319	125	0
1175033_1	0.393	1.313	1	1	3	3288	957	213	143	3310	886	314	151	0
1175841_1	0.809	1.752	1	1	4	1490	684	222	311	1227	435	301	329	0
1176613_1	0.520	1.434	1	1	5	1045	626	227	127	1021	549	291	116	0
1177385_1	0.708	1.633	1	1	6	1969	660	239	137	1652	396	297	122	0
1179253_1	-0.308	0.808	1	1	8	8236	2349	246	136	12974	3590	320	125	0
1180025_1	0.632	1.550	1	1	9	2070	649	221	138	1798	466	272	115	0
1180833_1	0.580	1.494	1	1	10	882	427	222	151	850	221	285	147	0
1181605_1	-1.185	0.440	1	1	11	1683	544	238	151	4497	1196	295	140	0
1182377_1	-0.197	0.873	1	1	12	6528	1199	228	238	9503	1400	266	433	0
1184245_1	-0.095	0.936	1	1	14	935	312	220	124	1228	325	251	113	0
1185017_1	-0.293	0.816	1	1	15	364	220	202	118	499	144	245	104	0
1185825_1	0.353	1.277	1	1	16	724	384	215	136	764	241	254	100	0
1186597_1	0.501	1.415	1	1	17	2056	841	208	146	1922	662	251	93	0
1187369_1	0.217	1.162	1	1	18	751	322	214	140	838	268	247	102	0
1189237_1	0.875	1.834	1	1	20	1248	589	220	133	974	367	257	100	0
1190009_1	0.197	1.146	1	1	21	754	338	220	138	851	243	255	101	0
1190817_1	-0.031	0.979	1	1	22	527	243	208	121	660	225	243	109	0
1191589_1	1.127	2.185	1	1	23	1787	694	216	127	1173	400	253	137	0
1192361_1	-0.510	0.702	1	1	24	317	172	199	131	483	151	268	129	0

Total number of rows: 21794

Table truncated, full table size 1394 Kbytes.

Supplementary data files not provided

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