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Sample GSM3402794 Query DataSets for GSM3402794
Status Public on Sep 28, 2018
Title Endo IFNg- ctr
Sample type RNA
 
Source name Endothelial cell expressed blood antigen A
Organism Homo sapiens
Characteristics cell type: Endothelial cell expressed blood antigen A
Treatment protocol EA.hy926/A cells were stimulated IFNγ in the presence or absence of anti-A antibody for 48hrs.
Growth protocol Blood group A or B antigen-expressing EA.hy926 cells (HLA-A; *24:02, *25:01, HLA-B; *15:01, *18:01, HLA-Cw; *03:03, *12:03, HLA-DRB1; *11:02, *13:42, HLA-DQB1; n/d, HLA-DPB1; n/d), the human endothelial-like immortalized cell line derived from the fusion of human umbilical vein endothelial cells (HUVEC) with the lung carcinoma cell line A549, were maintained in DMEM supplemented with 10% FBS (Hyclone, Logan, UT).
Extracted molecule total RNA
Extraction protocol Total RNA was purified from cultured cells using the Qiazol and miRNeasy mini kits (Qiagen).
Label biotin
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Gene expression data from endothelial cells
Data processing We employed ClariomTM S Assay based on affimatrix (Filgen Inc., Nagoya, Japan).
 
Submission date Sep 27, 2018
Last update date Sep 28, 2018
Contact name Kenta IWASAKI
Organization name Nagoya University School of Medicine
Department Department of Transplant Immunology
Street address 65 Tsurumai-cho, Showa-ku
City Nagoya
State/province Aichi
ZIP/Postal code 4668550
Country Japan
 
Platform ID GPL23159
Series (1)
GSE120545 Expression date from endothelial cells stimulated with anti-HLA class I and anti-A antibody

Data table header descriptions
ID_REF
VALUE SST-RMA signal

Data table
ID_REF VALUE
TC0100006437.hg.1 14.91893
TC0100006476.hg.1 23.48502
TC0100006479.hg.1 150.5547
TC0100006480.hg.1 53.20506
TC0100006483.hg.1 78.929
TC0100006486.hg.1 176.9522
TC0100006490.hg.1 33.7755
TC0100006492.hg.1 29.65247
TC0100006494.hg.1 249.1822
TC0100006497.hg.1 12.76124
TC0100006499.hg.1 86.56265
TC0100006501.hg.1 349.5921
TC0100006502.hg.1 14.26139
TC0100006514.hg.1 12.11872
TC0100006516.hg.1 23.01712
TC0100006517.hg.1 13.48261
TC0100006524.hg.1 42.17112
TC0100006540.hg.1 28.75521
TC0100006548.hg.1 13.12086
TC0100006550.hg.1 82.9359

Total number of rows: 24351

Table truncated, full table size 659 Kbytes.




Supplementary file Size Download File type/resource
GSM3402794_Endo_IFNg-_ctr_Clariom_S_Human_.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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