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Sample GSM3402796 Query DataSets for GSM3402796
Status Public on Sep 28, 2018
Title Endo IFNg+ ctr
Sample type RNA
 
Source name Endothelial cell expressed blood antigen A stimulated with IFNɤ
Organism Homo sapiens
Characteristics cell type: Endothelial cell expressed blood antigen A
Treatment protocol EA.hy926/A cells were stimulated IFNγ in the presence or absence of anti-A antibody for 48hrs.
Growth protocol Blood group A or B antigen-expressing EA.hy926 cells (HLA-A; *24:02, *25:01, HLA-B; *15:01, *18:01, HLA-Cw; *03:03, *12:03, HLA-DRB1; *11:02, *13:42, HLA-DQB1; n/d, HLA-DPB1; n/d), the human endothelial-like immortalized cell line derived from the fusion of human umbilical vein endothelial cells (HUVEC) with the lung carcinoma cell line A549, were maintained in DMEM supplemented with 10% FBS (Hyclone, Logan, UT).
Extracted molecule total RNA
Extraction protocol Total RNA was purified from cultured cells using the Qiazol and miRNeasy mini kits (Qiagen).
Label biotin
Label protocol Affymetrix
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description Gene expression data from endothelial cells
Data processing We employed ClariomTM S Assay based on affimatrix (Filgen Inc., Nagoya, Japan).
 
Submission date Sep 27, 2018
Last update date Sep 28, 2018
Contact name Kenta IWASAKI
Organization name Nagoya University School of Medicine
Department Department of Transplant Immunology
Street address 65 Tsurumai-cho, Showa-ku
City Nagoya
State/province Aichi
ZIP/Postal code 4668550
Country Japan
 
Platform ID GPL23159
Series (1)
GSE120545 Expression date from endothelial cells stimulated with anti-HLA class I and anti-A antibody

Data table header descriptions
ID_REF
VALUE SST-RMA signal

Data table
ID_REF VALUE
TC0100006437.hg.1 13.06911
TC0100006476.hg.1 18.4771
TC0100006479.hg.1 128.8021
TC0100006480.hg.1 42.07295
TC0100006483.hg.1 88.24568
TC0100006486.hg.1 174.699
TC0100006490.hg.1 30.68308
TC0100006492.hg.1 35.42045
TC0100006494.hg.1 208.1332
TC0100006497.hg.1 22.94884
TC0100006499.hg.1 105.2801
TC0100006501.hg.1 350.8687
TC0100006502.hg.1 13.2855
TC0100006514.hg.1 10.351
TC0100006516.hg.1 27.6691
TC0100006517.hg.1 16.92191
TC0100006524.hg.1 52.83593
TC0100006540.hg.1 29.50817
TC0100006548.hg.1 14.14185
TC0100006550.hg.1 73.59713

Total number of rows: 24351

Table truncated, full table size 659 Kbytes.




Supplementary file Size Download File type/resource
GSM3402796_Endo_IFNg+_ctr_Clariom_S_Human_.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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