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Sample GSM3454604 Query DataSets for GSM3454604
Status Public on Jun 23, 2021
Title cord blood GDM_17
Sample type genomic
 
Source name cord blood
Organism Homo sapiens
Characteristics disease state: GDM
neonate gender: female
gestational age (wks): 39
birth weight (g): 2498
neonatal 1 hour plasma glucose level (mg/dl): NA
tissue: GDM cord blood
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from cord blood using QIAsymphony DNA Midi Kit (96) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation EPIC Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner (iScan) setting
Data processing GenomeStudio software v1.9.0
The normalization method of uploaded dataset is dependent on GenomeStudio Methylation Module normalization algorithms. We performed normalization to internal controls and background subtraction.
 
Submission date Nov 01, 2018
Last update date Jun 23, 2021
Contact name Tomoko Kawai
E-mail(s) kawai-tm@ncchd.go.jp
Organization name National Research Institute for Child Health and Development
Department Department of Maternal-Fetal Biology
Street address 2-10-1 Okura
City Setagaya
State/province Tokyo
ZIP/Postal code 1578535
Country Japan
 
Platform ID GPL21145
Series (1)
GSE122086 Genome wide methylation of cord blood from gestational diabetes mellitus

Data table header descriptions
ID_REF
VALUE normalized Average Beta
Detection Pvalue Detection Pval

Data table
ID_REF VALUE Detection Pvalue
cg00000029 0.6516559 0.00
cg00000103 0.9167514 0.00
cg00000109 0.9096724 0.00
cg00000155 0.9194236 0.00
cg00000158 0.9304529 0.00
cg00000165 0.1352852 0.00
cg00000221 0.8740548 0.00
cg00000236 0.7476537 0.00
cg00000289 0.8884237 0.00
cg00000292 0.8291567 0.00
cg00000321 0.2489522 0.00
cg00000363 0.3107734 0.00
cg00000540 0.8859668 0.00
cg00000579 0.9404255 0.00
cg00000596 0.802869 0.00
cg00000622 0.009425378 0.00
cg00000658 0.8145798 0.00
cg00000714 0.2936876 0.00
cg00000721 0.9364641 0.00
cg00000734 0.08435264 0.00

Total number of rows: 866895

Table truncated, full table size 22071 Kbytes.




Supplementary file Size Download File type/resource
GSM3454604_200514040025_R04C01_Grn.idat.gz 7.0 Mb (ftp)(http) IDAT
GSM3454604_200514040025_R04C01_Red.idat.gz 6.9 Mb (ftp)(http) IDAT
Processed data included within Sample table

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