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Status
Public on Apr 21, 2003
Title
HDMTX-DX-3
Sample type
RNA
Source name
Primary Acute Lymphoblastic Leukemia Cells
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Sample Type: human total RNA Sample User: jmorris Description: ALL-pre patient study Comments (Sample): Experiment User: jmorris Probe Array Lot: 9914791 Exp 2-17-01 Comments (Exp): Reagents: (none) Reagent Lot: (none) Algorithm: Statistical Corner+ Avg:203, Count:32 Corner- Avg:27300, Count:32 BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:7.478643,SFGene:All Background:Avg:422.27,Stdev:10.15,Max:448.3,Min:398.5 Noise:Avg:11.63,Stdev:0.35,Max:12.5,Min:10.4 RawQ:16.38 Keywords = ALL
Submission date
Jan 03, 2003
Last update date
Mar 16, 2009
Contact name
William E Evans
E-mail(s)
william.evans@stjude.org
Phone
901-495-4995
Fax
901-495-6869
URL
http://www.stjude.org/leukemia/bio_evans.htm
Organization name
St.Jude Children's Research Hospital
Department
Pharmaceutical Sciences
Lab
Evans
Street address
332 N. Lauderdale St.
City
Memphis
State/province
TN
ZIP/Postal code
38105
Country
USA
Platform ID
GPL8300
Series (2)
GSE232
HDMTX-3 pair
GSE412
Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells
Data table header descriptions
ID_REF
As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE
This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value
Data table
ID_REF
VALUE
Detection_p_value
1000_at
953.1
0.089405
1001_at
213.8
0.302547
1002_f_at
237.3
0.458816
1003_s_at
70.6
0.824011
1004_at
207.7
0.581931
1005_at
796.1
0.011447
1006_at
13.6
0.892699
1007_s_at
785.8
0.007543
1008_f_at
3590.9
0.001602
1009_at
4975.0
0.000266
100_g_at
458.0
0.358690
1010_at
228.0
0.500000
1011_s_at
795.3
0.005643
1012_at
22.1
0.641310
1013_at
19.8
0.824011
1014_at
1827.0
0.001141
1015_s_at
81.2
0.956032
1016_s_at
88.6
0.660442
1017_at
681.6
0.011447
1018_at
453.4
0.117160
Total number of rows: 12600 Table truncated, full table size 296 Kbytes .Supplementary data files not provided