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Sample GSM3468 Query DataSets for GSM3468
Status Public on Apr 21, 2003
Title HDMTX-DX-3
Sample type RNA
 
Source name Primary Acute Lymphoblastic Leukemia Cells
Organism Homo sapiens
Extracted molecule total RNA
 
Description Sample Type: human total RNA
Sample User: jmorris
Description: ALL-pre patient study
Comments (Sample):
Experiment User: jmorris
Probe Array Lot: 9914791 Exp 2-17-01
Comments (Exp):
Reagents: (none)
Reagent Lot: (none)
Algorithm: Statistical
Corner+ Avg:203, Count:32
Corner- Avg:27300, Count:32
BF: Alpha1:0.04,Alpha2:0.06,Tau:0.015,Gamma1H:0.0025,Gamma1L:0.0025,Gamma2H:0.003,Gamma2L:0.003,Perturbation:1.1,TGT:500,NF:1.000000,SF:7.478643,SFGene:All
Background:Avg:422.27,Stdev:10.15,Max:448.3,Min:398.5
Noise:Avg:11.63,Stdev:0.35,Max:12.5,Min:10.4
RawQ:16.38
Keywords = ALL
 
Submission date Jan 03, 2003
Last update date Mar 16, 2009
Contact name William E Evans
E-mail(s) william.evans@stjude.org
Phone 901-495-4995
Fax 901-495-6869
URL http://www.stjude.org/leukemia/bio_evans.htm
Organization name St.Jude Children's Research Hospital
Department Pharmaceutical Sciences
Lab Evans
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL8300
Series (2)
GSE232 HDMTX-3 pair
GSE412 Treatment-specific changes in gene expression discriminate in vivo drug response in human leukemia cells

Data table header descriptions
ID_REF As defined by Affymetrix, these are the probe set identifiers, each of which is unique to a specific probe set defining a specific region of a single gene or set.
VALUE This is the final calculated meauremeent for each probe set identifer that has been made comparable, through scaling or normalization, accross all samples and rows.
Detection_p_value

Data table
ID_REF VALUE Detection_p_value
1000_at 953.1 0.089405
1001_at 213.8 0.302547
1002_f_at 237.3 0.458816
1003_s_at 70.6 0.824011
1004_at 207.7 0.581931
1005_at 796.1 0.011447
1006_at 13.6 0.892699
1007_s_at 785.8 0.007543
1008_f_at 3590.9 0.001602
1009_at 4975.0 0.000266
100_g_at 458.0 0.358690
1010_at 228.0 0.500000
1011_s_at 795.3 0.005643
1012_at 22.1 0.641310
1013_at 19.8 0.824011
1014_at 1827.0 0.001141
1015_s_at 81.2 0.956032
1016_s_at 88.6 0.660442
1017_at 681.6 0.011447
1018_at 453.4 0.117160

Total number of rows: 12600

Table truncated, full table size 296 Kbytes.




Supplementary data files not provided

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