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Sample GSM34764

Query DataSets for GSM34764

Status

Public on Nov 10, 2004

Title

PMI40 deletion strain, 1 g/L initial mannose, repeat 1/3

Sample type

RNA

Source name

Total RNA from an aerobic batch culture of a pmi40 deletion strain

Organism

Saccharomyces cerevisiae

Extracted molecule

total RNA

Description

A Saccharomyces cerevisiae strain with PMI40 knockout (parent CEN.PK113-7A) was cultivated in an aerated batch with mineral medium initially containing 15 g/L glucose and 1 g/L mannose. Samples for gene expression measurement were taken 6 hours after inoculation. Replicate assay 1 of 3.

Submission date

Nov 08, 2004

Last update date

May 27, 2005

Contact name

Anssi Torma

E-mail(s)

atorma@cc.hut.fi

Phone

+358-9-19125226

Organization name

Haartman Institute

Department

Department of Bacteriology and Immunology

Lab

Rational Drug Design Program

Street address

Haartmaninkatu 8

City

Helsinki

ZIP/Postal code

FIN-00290

Country

Finland

Platform ID

GPL90

Series (1)

GSE1938

Phosphomannose isomerase gene (PMI40) deletion strain cultivated in varying initial mannose concentrations

Data table header descriptions
ID_REF
VALUE	signal
ABS_CALL	absolute detection call
DETECTION P-VALUE	detection p-value (here P: p < 0.04, M: 0.04 <= p < 0.06, A: p >= 0.06)

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-MurIL2_at	2.5	A	0.921998
AFFX-MurIL10_at	0.8	A	0.783476
AFFX-MurIL4_at	0.8	A	0.9273
AFFX-MurFAS_at	1	A	0.945787
AFFX-BioB-5_at	73.6	P	0.002275
AFFX-BioB-M_at	85.9	P	0.000127
AFFX-BioB-3_at	62.1	P	0.000446
AFFX-BioC-5_at	97.2	P	0.000258
AFFX-BioC-3_at	55.9	P	0.000225
AFFX-BioDn-5_at	44.1	P	0.000044
AFFX-BioDn-3_at	374.4	P	0.000044
AFFX-CreX-5_at	558.6	P	0.000052
AFFX-CreX-3_at	560.5	P	0.000044
AFFX-BioB-5_st	5	A	0.51489
AFFX-BioB-M_st	0.7	A	0.921998
AFFX-BioB-3_st	2.1	A	0.749204
AFFX-BioC-5_st	4.4	A	0.783476
AFFX-BioC-3_st	1.2	A	0.783476
AFFX-BioDn-5_st	2.6	A	0.544587
AFFX-BioDn-3_st	3.9	A	0.216524

Total number of rows: 9335

Table truncated, full table size 220 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM34764.CEL.gz	1.8 Mb	(ftp)(http)	CEL
GSM34764.EXP.gz	347 b	(ftp)(http)	EXP