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Sample GSM347802 Query DataSets for GSM347802
Status Public on Aug 29, 2009
Title Control, biological replicate 1, technical replicate 1
Sample type RNA
 
Source name Rhesus hippocampus
Organism Macaca mulatta
Characteristics Gender: Male
Age (yrs): 5
Anti-CD8 Treatment: No
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol Reagent per manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp Biotin II Enhance
 
Hybridization protocol Standard Affymetrix 49 Format Hybridization with 15 ug of fragmented cRNA
Scan protocol Affymetrix EukGE-WS2v4
Description Gene expression from control monkey hippocampus
Data processing CEL files were analyzed with the Bioconductor implementation of the RMA (Robust Multichip Average) algorithm).
 
Submission date Dec 04, 2008
Last update date Aug 29, 2009
Contact name Howard Fox
E-mail(s) hfox@unmc.edu
Phone 402 559-4821
Fax 402 559-7495
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Street address 985800 Nebraska Medical Center - DRC 3008
City Omaha
State/province NE
ZIP/Postal code 68198
Country USA
 
Platform ID GPL3535
Series (1)
GSE13824 SIV Encephalitis and Uninfected Control: Hippocampus Expression Profiles

Data table header descriptions
ID_REF
VALUE RMA expression values.

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.3636128054563
AFFX-BioB-5_at 8.48417350152799
AFFX-BioB-M_at 9.02371819268376
AFFX-BioC-3_at 9.55094214746472
AFFX-BioC-5_at 9.30797868585389
AFFX-BioDn-3_at 11.6488879079756
AFFX-BioDn-5_at 11.0572933620135
AFFX-CreX-3_at 13.2744603610996
AFFX-CreX-5_at 13.2321375866089
AFFX-DapX-3_at 12.515743901442
AFFX-DapX-5_at 10.7388987521794
AFFX-DapX-M_at 11.8327026943664
AFFX-LysX-3_at 9.96206714804992
AFFX-LysX-5_at 8.6698736491698
AFFX-LysX-M_at 9.13816532107948
AFFX-Mmu-actin-3_s_at 12.6260286931026
AFFX-Mmu-actin-5_at 12.3228092587689
AFFX-Mmu-actin-M_at 12.0455067874234
AFFX-Mmu-actin-M_x_at 12.4923885745291
AFFX-Mmu-ef1a-3_x_at 13.1080036518268

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM347802.CEL.gz 8.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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