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Sample GSM347812 Query DataSets for GSM347812
Status Public on Aug 29, 2009
Title Control, biological replicate 3, technical replicate 1
Sample type RNA
 
Source name Rhesus hippocampus
Organism Macaca mulatta
Characteristics Gender: Male
Age (yrs): 5
Anti-CD8 Treatment: No
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol Reagent per manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp Biotin II Enhance
 
Hybridization protocol Standard Affymetrix 49 Format Hybridization with 15 ug of fragmented cRNA
Scan protocol Affymetrix EukGE-WS2v4
Description Gene expression from control monkey hippocampus
Data processing CEL files were analyzed with the Bioconductor implementation of the RMA (Robust Multichip Average) algorithm).
 
Submission date Dec 04, 2008
Last update date Aug 29, 2009
Contact name Howard Fox
E-mail(s) hfox@unmc.edu
Phone 402 559-4821
Fax 402 559-7495
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Street address 985800 Nebraska Medical Center - DRC 3008
City Omaha
State/province NE
ZIP/Postal code 68198
Country USA
 
Platform ID GPL3535
Series (1)
GSE13824 SIV Encephalitis and Uninfected Control: Hippocampus Expression Profiles

Data table header descriptions
ID_REF
VALUE RMA expression values.

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.40832514989842
AFFX-BioB-5_at 8.30020887092192
AFFX-BioB-M_at 8.8704532636455
AFFX-BioC-3_at 9.47238282955425
AFFX-BioC-5_at 9.1939745573565
AFFX-BioDn-3_at 11.7023619863181
AFFX-BioDn-5_at 10.8480967217003
AFFX-CreX-3_at 13.2677130598729
AFFX-CreX-5_at 13.1164292058024
AFFX-DapX-3_at 12.1290798851
AFFX-DapX-5_at 9.9553503932041
AFFX-DapX-M_at 11.4095517730324
AFFX-LysX-3_at 9.1897676992847
AFFX-LysX-5_at 8.00889592203002
AFFX-LysX-M_at 8.69015221404351
AFFX-Mmu-actin-3_s_at 12.6197982530307
AFFX-Mmu-actin-5_at 12.5718019754306
AFFX-Mmu-actin-M_at 11.9814893162436
AFFX-Mmu-actin-M_x_at 12.4716310711278
AFFX-Mmu-ef1a-3_x_at 13.1201898945348

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM347812.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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