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Sample GSM347813 Query DataSets for GSM347813
Status Public on Aug 29, 2009
Title Control, biological replicate 3, technical replicate 2
Sample type RNA
 
Source name Rhesus hippocampus
Organism Macaca mulatta
Characteristics Gender: Male
Age (yrs): 5
Anti-CD8 Treatment: No
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol Reagent per manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp Biotin II Enhance
 
Hybridization protocol Standard Affymetrix 49 Format Hybridization with 15 ug of fragmented cRNA
Scan protocol Affymetrix EukGE-WS2v4
Description Gene expression from control monkey hippocampus
Data processing CEL files were analyzed with the Bioconductor implementation of the RMA (Robust Multichip Average) algorithm).
 
Submission date Dec 04, 2008
Last update date Aug 29, 2009
Contact name Howard Fox
E-mail(s) hfox@unmc.edu
Phone 402 559-4821
Fax 402 559-7495
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Street address 985800 Nebraska Medical Center - DRC 3008
City Omaha
State/province NE
ZIP/Postal code 68198
Country USA
 
Platform ID GPL3535
Series (1)
GSE13824 SIV Encephalitis and Uninfected Control: Hippocampus Expression Profiles

Data table header descriptions
ID_REF
VALUE RMA expression values.

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.63977919766798
AFFX-BioB-5_at 8.42791802312377
AFFX-BioB-M_at 9.1405232407272
AFFX-BioC-3_at 9.5675167182202
AFFX-BioC-5_at 9.36937561800987
AFFX-BioDn-3_at 11.77243152135
AFFX-BioDn-5_at 11.03893136113
AFFX-CreX-3_at 13.3485468573249
AFFX-CreX-5_at 13.2387397248867
AFFX-DapX-3_at 12.1395830758306
AFFX-DapX-5_at 10.0763042555824
AFFX-DapX-M_at 11.4658416355137
AFFX-LysX-3_at 9.32011189123921
AFFX-LysX-5_at 8.03458272390243
AFFX-LysX-M_at 8.68249004772014
AFFX-Mmu-actin-3_s_at 12.5544434139422
AFFX-Mmu-actin-5_at 12.5961074800689
AFFX-Mmu-actin-M_at 12.0007648856786
AFFX-Mmu-actin-M_x_at 12.5148753972567
AFFX-Mmu-ef1a-3_x_at 13.0684813616452

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM347813.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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