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Sample GSM347817 Query DataSets for GSM347817
Status Public on Aug 29, 2009
Title Control, biological replicate 5, technical replicate 2
Sample type RNA
 
Source name Rhesus hippocampus
Organism Macaca mulatta
Characteristics Gender: Male
Age (yrs): 4
Anti-CD8 Treatment: No
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol Reagent per manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp Biotin II Enhance
 
Hybridization protocol Standard Affymetrix 49 Format Hybridization with 15 ug of fragmented cRNA
Scan protocol Affymetrix EukGE-WS2v4
Description Gene expression from control monkey hippocampus
Data processing CEL files were analyzed with the Bioconductor implementation of the RMA (Robust Multichip Average) algorithm).
 
Submission date Dec 04, 2008
Last update date Aug 29, 2009
Contact name Howard Fox
E-mail(s) hfox@unmc.edu
Phone 402 559-4821
Fax 402 559-7495
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Street address 985800 Nebraska Medical Center - DRC 3008
City Omaha
State/province NE
ZIP/Postal code 68198
Country USA
 
Platform ID GPL3535
Series (1)
GSE13824 SIV Encephalitis and Uninfected Control: Hippocampus Expression Profiles

Data table header descriptions
ID_REF
VALUE RMA expression values.

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.69582043741297
AFFX-BioB-5_at 8.36376811938018
AFFX-BioB-M_at 9.32928185632946
AFFX-BioC-3_at 9.74317563443748
AFFX-BioC-5_at 9.48733584903903
AFFX-BioDn-3_at 12.0199039376383
AFFX-BioDn-5_at 11.1651959401439
AFFX-CreX-3_at 13.6404587449829
AFFX-CreX-5_at 13.4611656984387
AFFX-DapX-3_at 12.3138608120632
AFFX-DapX-5_at 10.2112709552429
AFFX-DapX-M_at 11.6209908403056
AFFX-LysX-3_at 9.39593287179854
AFFX-LysX-5_at 8.08268263226647
AFFX-LysX-M_at 8.81518204465322
AFFX-Mmu-actin-3_s_at 12.7534532267193
AFFX-Mmu-actin-5_at 12.6018818517507
AFFX-Mmu-actin-M_at 12.0853879669764
AFFX-Mmu-actin-M_x_at 12.6285276712402
AFFX-Mmu-ef1a-3_x_at 13.130047379789

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM347817.CEL.gz 8.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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