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Sample GSM347825 Query DataSets for GSM347825
Status Public on Aug 29, 2009
Title Control, biological replicate 8, technical replicate 1
Sample type RNA
 
Source name Rhesus hippocampus
Organism Macaca mulatta
Characteristics Gender: Male
Age (yrs): 4
Anti-CD8 Treatment: Yes
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol Reagent per manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp Biotin II Enhance
 
Hybridization protocol Standard Affymetrix 49 Format Hybridization with 15 ug of fragmented cRNA
Scan protocol Affymetrix EukGE-WS2v4
Description Gene expression from control monkey hippocampus
Data processing CEL files were analyzed with the Bioconductor implementation of the RMA (Robust Multichip Average) algorithm).
 
Submission date Dec 04, 2008
Last update date Aug 29, 2009
Contact name Howard Fox
E-mail(s) hfox@unmc.edu
Phone 402 559-4821
Fax 402 559-7495
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Street address 985800 Nebraska Medical Center - DRC 3008
City Omaha
State/province NE
ZIP/Postal code 68198
Country USA
 
Platform ID GPL3535
Series (1)
GSE13824 SIV Encephalitis and Uninfected Control: Hippocampus Expression Profiles

Data table header descriptions
ID_REF
VALUE RMA expression values.

Data table
ID_REF VALUE
AFFX-BioB-3_at 9.00875987137264
AFFX-BioB-5_at 8.92596983971598
AFFX-BioB-M_at 9.68274284505707
AFFX-BioC-3_at 10.0191990119247
AFFX-BioC-5_at 9.80984400999167
AFFX-BioDn-3_at 11.99113944904
AFFX-BioDn-5_at 11.3796509509133
AFFX-CreX-3_at 13.4842214692538
AFFX-CreX-5_at 13.4333154740052
AFFX-DapX-3_at 12.7723117444813
AFFX-DapX-5_at 10.7179086947664
AFFX-DapX-M_at 12.0781327656951
AFFX-LysX-3_at 10.3716209897123
AFFX-LysX-5_at 9.2499939533814
AFFX-LysX-M_at 9.78005847588955
AFFX-Mmu-actin-3_s_at 12.6756249702937
AFFX-Mmu-actin-5_at 10.8921041273845
AFFX-Mmu-actin-M_at 11.1069285477318
AFFX-Mmu-actin-M_x_at 11.6152838982707
AFFX-Mmu-ef1a-3_x_at 12.9125843235213

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM347825.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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