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Sample GSM347827 Query DataSets for GSM347827
Status Public on Aug 29, 2009
Title Control, biological replicate 9, technical replicate 1
Sample type RNA
 
Source name Rhesus hippocampus
Organism Macaca mulatta
Characteristics Gender: Male
Age (yrs): 3
Anti-CD8 Treatment: Yes
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol Reagent per manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp Biotin II Enhance
 
Hybridization protocol Standard Affymetrix 49 Format Hybridization with 15 ug of fragmented cRNA
Scan protocol Affymetrix EukGE-WS2v4
Description Gene expression from control monkey hippocampus
Data processing CEL files were analyzed with the Bioconductor implementation of the RMA (Robust Multichip Average) algorithm).
 
Submission date Dec 04, 2008
Last update date Aug 29, 2009
Contact name Howard Fox
E-mail(s) hfox@unmc.edu
Phone 402 559-4821
Fax 402 559-7495
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Street address 985800 Nebraska Medical Center - DRC 3008
City Omaha
State/province NE
ZIP/Postal code 68198
Country USA
 
Platform ID GPL3535
Series (1)
GSE13824 SIV Encephalitis and Uninfected Control: Hippocampus Expression Profiles

Data table header descriptions
ID_REF
VALUE RMA expression values.

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.64366772649298
AFFX-BioB-5_at 8.48214137619879
AFFX-BioB-M_at 9.10960966153713
AFFX-BioC-3_at 9.62368494790195
AFFX-BioC-5_at 9.36079940592626
AFFX-BioDn-3_at 11.822593258761
AFFX-BioDn-5_at 10.9887914955991
AFFX-CreX-3_at 13.4001954025155
AFFX-CreX-5_at 13.2364901212948
AFFX-DapX-3_at 11.9843093475416
AFFX-DapX-5_at 9.88012038253333
AFFX-DapX-M_at 11.2988501840791
AFFX-LysX-3_at 9.0522467765146
AFFX-LysX-5_at 7.7056738462673
AFFX-LysX-M_at 8.38613018333205
AFFX-Mmu-actin-3_s_at 12.6342606016858
AFFX-Mmu-actin-5_at 12.7227705773809
AFFX-Mmu-actin-M_at 12.149201770947
AFFX-Mmu-actin-M_x_at 12.6124677027663
AFFX-Mmu-ef1a-3_x_at 13.161266833524

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM347827.CEL.gz 8.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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