|
| Status |
Public on Jul 01, 2009 |
| Title |
Spermatozoal RNA profile from a normally fertile individual: Sample 111 |
| Sample type |
RNA |
| |
|
| Source name |
Normal Human Spermatozoa
|
| Organism |
Homo sapiens |
| Characteristics |
Semen from a normally fertile donor, fertility demonstrated by fathering a child.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Semen was collected then treated with Somatic Cell Lysis Buffer (0.1% sodium dodecyl sulfate [SDS], 0.5% Triton X-100) on ice for 30 minutes. Lack of somatic cell contamination and sperm count were established by microscopic examination. RNA was isolated from sample using Trizol. Samples were then treated with RNase-free DNase I
|
| Label |
Biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Illumina protocol from total RNA (Whole-Genome Gene Expression with IntelliHyb Seal System Manual, 2006, Illumina).
|
| |
|
| Hybridization protocol |
Hybridization to Illumina Sentrix Expression BeadChip, staining and washing were carried out as described (Illumina, Wallingford).
|
| Scan protocol |
Scanning procedures were carried out as described by Illumina, Wallingford.
|
| Description |
Spermatozoal RNA profile from a normally fertile individual
|
| Data processing |
The data were analyzed with Illumina Bead Studio. Raw data was used without further normalization due to the high inherent variability in sperm RNA contributions.
|
| |
|
| Submission date |
Dec 21, 2008 |
| Last update date |
Dec 22, 2008 |
| Contact name |
Stephen A Krawetz |
| E-mail(s) |
steve@compbio.med.wayne.edu
|
| Phone |
313-577-0765
|
| URL |
http://compbio.med.wayne.edu
|
| Organization name |
Wayne State University
|
| Department |
Obstetrics and Gynecology
|
| Street address |
275 E. Hancock, CS Mott Center
|
| City |
Detroit |
| State/province |
MI |
| ZIP/Postal code |
48201 |
| Country |
USA |
| |
|
| Platform ID |
GPL6104 |
| Series (1) |
| GSE14078 |
Normal fertile Spermatozoal RNA Profiles |
|
