|
| Status |
Public on Jan 13, 2009 |
| Title |
33655 |
| Sample type |
RNA |
| |
|
| Source name |
oropharynx, SIV infected
|
| Organism |
Macaca mulatta |
| Characteristics |
SIV infected, adult male
|
| Biomaterial provider |
California National Primate Research Center
|
| Treatment protocol |
none
|
| Growth protocol |
none
|
| Extracted molecule |
total RNA |
| Extraction protocol |
protocols and reagents in Qiagen RNeasy kit
|
| Label |
biotin
|
| Label protocol |
cDNA copies of the mRNA synthesized by reverse transcription, and used as a template for the synthesis of biotin-labeled cRNA in an in vitro transcription (IVT) reaction
|
| |
|
| Hybridization protocol |
Hybridized overnight (16 hr) to Rhesus macaque GeneChips
|
| Scan protocol |
Affymetrix 3000 scanner at the excitation wavelength of 488 nm
|
| Description |
none
|
| Data processing |
Data processed with dChip software. Invariant set normalization and model-based expression with PM only probesets
|
| |
|
| Submission date |
Jan 08, 2009 |
| Last update date |
Jan 12, 2009 |
| Contact name |
Michael George |
| E-mail(s) |
mdgeorge@ucdavis.edu
|
| Organization name |
University of California, Davis
|
| Department |
Medical Microbiology and Immunology
|
| Street address |
451 Health Sciences Drive
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
| |
|
| Platform ID |
GPL3535 |
| Series (1) |
| GSE14351 |
Oral mucosal response to SIV infection |
|
