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Sample GSM35904

Query DataSets for GSM35904

Status

Public on Jan 01, 2005

Title

RAW LPS 3

Sample type

RNA

Source name

RAW 264.7 macrophage cell line

Organism

Mus musculus

Extracted molecule

total RNA

Description

RAW macrophages treated with 100 ng/ml LPS for 18 hours. RNA was isolated using Ultraspec RNA isolation system. Hybridization and measurements were performed at the Univeristy of Pittsburgh Genomics and Proteomics Core Facilities. 3 replicates of untreated were compare to 3 replicates each of 100 ng/ml LPS stimulation for 18 hours and CstF-64 constituitive over-expression.
Keywords = RAW 264.7 macrophage

Submission date

Nov 22, 2004

Last update date

May 27, 2005

Contact name

Milcarek Christine

E-mail(s)

sasst114@pitt.edu

Phone

412-648-9098

Organization name

University Of Pittsburgh

Department

Immunology

Street address

200 Lothrop St. BST E1009

City

Pittsburgh

State/province

ZIP/Postal code

15221

Country

USA

Platform ID

GPL339

Series (1)

GSE2002

CstF-64 Influenced Gene Expression

Data table header descriptions
ID_REF	Affymetrix accession number
VALUE	'signal' a measure of the abundance of a transcript
ABS_CALL	the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE	'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	101.2	P	0.000581
AFFX-BioB-M_at	158.2	P	0.000044
AFFX-BioB-3_at	94.7	P	0.000127
AFFX-BioC-5_at	241.9	P	0.000081
AFFX-BioC-3_at	177.6	P	0.000052
AFFX-BioDn-5_at	215.4	P	0.000052
AFFX-BioDn-3_at	1069.4	P	0.000081
AFFX-CreX-5_at	1968.3	P	0.000044
AFFX-CreX-3_at	3182.3	P	0.000044
AFFX-DapX-5_at	1.3	A	0.340661
AFFX-DapX-M_at	7.3	A	0.262827
AFFX-DapX-3_at	4.9	A	0.860518
AFFX-LysX-5_at	3.1	A	0.51489
AFFX-LysX-M_at	1	A	0.883887
AFFX-LysX-3_at	1.1	A	0.574038
AFFX-PheX-5_at	1	A	0.932322
AFFX-PheX-M_at	0.9	A	0.897835
AFFX-PheX-3_at	6.5	A	0.39692
AFFX-ThrX-5_at	1.6	A	0.860518
AFFX-ThrX-M_at	7.8	A	0.41138

Total number of rows: 22690

Table truncated, full table size 607 Kbytes.

Supplementary data files not provided