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Sample GSM35912 Query DataSets for GSM35912
Status Public on Nov 24, 2004
Title BREAST_MDA_MB435
Sample type RNA
 
Channel 1
Source name Cy5-BREAST_MDA_MB435
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1168 1751 2472 556 0 2907.7 3039.8 0.0640979789124843 1.045431097 0.0640979789124843
2 1104 815 1648 473 0 1827.7 2226.9 0.285007489670203 1.218416589 0.285007489670203
3 1120 8478 2344 9015 0 10195.8 10693 0.068691689870704 1.048765178 0.068691689870704
4 1096 470 1616 145 0 1458 1891.4 0.375463782419176 1.297256516 0.375463782419176
5 1104 88 1288 -247 0 1039.8 1193.3 0.198650726901482 1.147624543 0.198650726901482
6 1040 3772 1880 3930 0 4986.3 5606.9 0.169233654091118 1.124461023 0.169233654091118
7 1168 867 1664 149 0 1927.3 1914.3 -0.00976421716374886 0.993254812 -0.00976421716374886
8 1080 3074 1960 1161 0 4200.3 3086.6 -0.444473842045931 0.734852272 -0.444473842045931
9 1168 24591 1728 21107 0 28868.4 20375.4 -0.502662767678926 0.705802885 -0.502662767678926
10 1080 273 1880 -176 0 1246.7 1849.3 0.568864939221782 1.48335606 0.568864939221782
11 1144 166 1688 -67 0 1201.6 1767.2 0.556508606136204 1.470705726 0.556508606136204
12 1064 62 1784 -321 0 1013.3 1625.8 0.682088428096999 1.604460673 0.682088428096999
13 936 2352 648 2977 0 3316.2 3594.2 0.116139672053331 1.083830891 0.116139672053331
14 976 149 712 31 0 947.7 882 -0.103651782034923 0.930674264 -0.103651782034923
15 920 3231 664 1382 0 4128.1 2057.4 -1.00465561042974 0.498389089 -1.00465561042974
16 984 2225 720 3106 0 3239.8 3789.6 0.226140821369495 1.169701833 0.226140821369495
17 1032 3860 616 1686 0 4920 2288.9 -1.10400388208513 0.465223577 -1.10400388208513
18 928 124 672 33 0 880.1 842.7 -0.0626483318635696 0.957504829 -0.0626483318635696
19 1008 145 616 54 0 966.6 799.2 -0.274362412434638 0.826815642 -0.274362412434638
20 928 10498 672 391 0 11531.4 1053.3 -3.45257937449755 0.091341901 -3.45257937449755

Total number of rows: 9706

Table truncated, full table size 819 Kbytes.




Supplementary data files not provided
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