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Sample GSM35921 Query DataSets for GSM35921
Status Public on Nov 24, 2004
Title CNS_SNB75
Sample type RNA
 
Channel 1
Source name Cy5-CNS_SNB75
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 960 5148 640 7215 0 6314.2 7598.5 0.267114690188341 1.203398689 0.267114690188341
2 1184 323 568 311 0 1284.2 1031.5 -0.316126082439675 0.803223797 -0.316126082439675
3 936 6086 624 7259 0 7384.8 7495.7 0.0215043638829958 1.015017333 0.0215043638829958
4 1184 436 568 263 0 1383.4 973.1 -0.50755838568042 0.703411884 -0.50755838568042
5 888 122 640 104 0 806.6 931.6 0.207857233496814 1.154971485 0.207857233496814
6 896 2489 600 3728 0 3412.1 4293.6 0.331527864732121 1.258345301 0.331527864732121
7 912 528 664 791 0 1281.5 1635 0.351457157201959 1.275848615 0.351457157201959
8 896 2424 608 3007 0 3316.4 3618.9 0.125933218150002 1.091213364 0.125933218150002
9 912 18664 656 22082 0 21093.6 21102.1 0.000581239947742116 1.000402966 0.000581239947742116
10 896 279 608 511 0 1000.4 1314.2 0.393607884398883 1.31367453 0.393607884398883
11 904 185 648 210 0 882.9 1058.3 0.261426702761495 1.198663495 0.261426702761495
12 928 116 616 102 0 833.7 899.1 0.108953249330342 1.078445484 0.108953249330342
13 976 2866 592 3200 0 3871.8 3762.8 -0.041197822470789 0.971847719 -0.041197822470789
14 1168 103 536 66 0 1015.8 753.2 -0.431511474394848 0.741484544 -0.431511474394848
15 968 3066 592 1275 0 3941.3 1910.9 -1.0444192864011 0.484840027 -1.0444192864011
16 1168 2109 528 1954 0 3206.1 2536.9 -0.337752772648162 0.791272886 -0.337752772648162
17 824 3635 600 4739 0 4573.7 5205.1 0.186564141315788 1.138050156 0.186564141315788
18 976 100 600 34 0 857.9 795.2 -0.109491734448617 0.926914559 -0.109491734448617
19 840 156 600 87 0 794.1 861.7 0.117864988783914 1.085127818 0.117864988783914
20 1024 4217 608 125 0 4937.8 778 -2.66602634246826 0.157560047 -2.66602634246826

Total number of rows: 9706

Table truncated, full table size 811 Kbytes.




Supplementary data files not provided
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