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Sample GSM35927 Query DataSets for GSM35927
Status Public on Nov 24, 2004
Title COLON_HT29
Sample type RNA
 
Channel 1
Source name Cy5-COLON_HT29
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1112 1273 928 1185 0 2103.5 2395.7 0.187655440455644 1.138911338 0.187655440455644
2 1376 198 1296 39 0 1316 1596.7 0.278933784342348 1.213297872 0.278933784342348
3 1112 8247 896 11228 0 9126.6 12432.7 0.445990231699794 1.362248811 0.445990231699794
4 1424 376 1288 62 0 1519.3 1599.4 0.0741240212295431 1.052721648 0.0741240212295431
5 1368 -152 1272 -268 0 1001.5 1219 0.283535705231792 1.217174239 0.283535705231792
6 1104 2226 808 2541 0 3049.5 3657.1 0.262127360473998 1.199245778 0.262127360473998
7 1352 165 1192 -18 0 1258.3 1415.3 0.169631966092127 1.124771517 0.169631966092127
8 1120 2635 824 931 0 3346.1 1969.5 -0.764651143686448 0.588595679 -0.764651143686448
9 1312 17143 1128 10154 0 18442.8 11289.5 -0.708076112013591 0.612135901 -0.708076112013591
10 1112 139 824 34 0 1029.5 1042.6 0.018241935640965 1.012724624 0.018241935640965
11 1296 133 1088 2 0 1180.3 1319.7 0.161056406745303 1.118105566 0.161056406745303
12 1120 25 832 -30 0 941.3 975.6 0.05163516266156 1.036438967 0.05163516266156
13 1416 4153 936 4639 0 5260.1 5902.4 0.166211467591427 1.122107945 0.166211467591427
14 2232 13 2112 -310 0 1957.9 2066.3 0.0777426496548944 1.055365443 0.0777426496548944
15 1408 2558 904 1746 0 3621.4 2902.2 -0.319400594921825 0.801402772 -0.319400594921825
16 2336 2550 2256 2771 0 4578.1 5365 0.228829194200867 1.171883532 0.228829194200867
17 1944 3656 2192 3530 0 5295.4 6051.2 0.192481602315839 1.14272765 0.192481602315839
18 1352 105 880 3 0 1200.3 1071.8 -0.163359313046816 0.892943431 -0.163359313046816
19 1904 -150 2104 -525 0 1492 1856.3 0.31518235049631 1.244168901 0.31518235049631
20 1368 18560 896 339 0 18673.5 1318 -3.82457008496705 0.070581305 -3.82457008496705

Total number of rows: 9706

Table truncated, full table size 834 Kbytes.




Supplementary data files not provided
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