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Sample GSM35933 Query DataSets for GSM35933
Status Public on Nov 24, 2004
Title LEUKEMIA_K562B_REPRO
Sample type RNA
 
Channel 1
Source name Cy5-LEUKEMIA_K562B_REPRO
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1456 528 1216 967 0 1800.4 2405.6 0.418079303433858 1.336147523 0.418079303433858
2 1712 553 1384 135 0 2032.5 1692.7 -0.263929047911572 0.832816728 -0.263929047911572
3 1456 9004 1208 17070 0 11733.6 16294 0.473695096671204 1.388661621 0.473695096671204
4 1704 510 1392 171 0 1987.3 1741.3 -0.190644896410406 0.876213959 -0.190644896410406
5 1344 190 1008 120 0 1348.7 1282.9 -0.0721607577522887 0.951212278 -0.0721607577522887
6 1488 2254 1184 3109 0 3690.9 4352.4 0.237838500468157 1.179224579 0.237838500468157
7 1408 787 1024 531 0 1969 1733.5 -0.183775274981683 0.88039614 -0.183775274981683
8 1488 2459 1192 1395 0 3764.7 2712.3 -0.473018145154431 0.720455813 -0.473018145154431
9 1448 25252 1048 13348 0 31476 12211.6 -1.36599997448072 0.387965434 -1.36599997448072
10 1488 373 1200 93 0 1646.2 1461.7 -0.171492380060356 0.887923703 -0.171492380060356
11 1416 349 1056 244 0 1559.4 1471.4 -0.0838015431572981 0.943568039 -0.0838015431572981
12 1520 93 1208 4 0 1420.7 1376.1 -0.0460166284996428 0.968607025 -0.0460166284996428
13 1480 1815 1216 3749 0 3252.4 5030.1 0.629082381465614 1.546580986 0.629082381465614
14 1632 44 1344 21 0 1480.7 1545.1 0.0614208437815714 1.043492943 0.0614208437815714
15 1472 1711 1216 284 0 2904.2 1644 -0.820930511277616 0.566076716 -0.820930511277616
16 1656 1057 1392 1733 0 2560.9 3310.6 0.37044179042316 1.292748643 0.37044179042316
17 1312 3298 976 2384 0 4532.5 3417.4 -0.407407897635798 0.753976834 -0.407407897635798
18 1496 132 1240 121 0 1437.1 1541.8 0.101455178090926 1.072855055 0.101455178090926
19 1416 110 992 84 0 1340.9 1224.5 -0.131008875513035 0.913192632 -0.131008875513035
20 1520 3606 1272 31625 0 5713.1 29516.5 2.36917597225836 5.16645954 2.36917597225836

Total number of rows: 9706

Table truncated, full table size 837 Kbytes.




Supplementary data files not provided
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