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Sample GSM35934 Query DataSets for GSM35934
Status Public on Nov 24, 2004
Title LEUKEMIA_K562
Sample type RNA
 
Channel 1
Source name Cy5-LEUKEMIA_K562
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1504 606 1120 861 0 1794.3 2329.6 0.376661137217374 1.298333612 0.376661137217374
2 1576 460 1104 148 0 1745.4 1460.4 -0.257194128906399 0.836713647 -0.257194128906399
3 1520 10027 1128 10233 0 10592.1 12385.2 0.225628518364467 1.169286544 0.225628518364467
4 1584 361 1096 201 0 1667.6 1512.7 -0.140647378321215 0.907112017 -0.140647378321215
5 1544 190 1112 183 0 1489.1 1508 0.0181957874487385 1.01269223 0.0181957874487385
6 1576 1830 1088 1584 0 2882.4 3157.4 0.131466485875932 1.095406606 0.131466485875932
7 1672 520 1152 231 0 1874.6 1617.1 -0.213173890700586 0.862637363 -0.213173890700586
8 1640 2434 1128 719 0 3459 2175.4 -0.669074313049338 0.62891009 -0.669074313049338
9 1680 36549 1120 35142 0 37741.6 36730.3 -0.0391849050745397 0.973204634 -0.0391849050745397
10 1656 554 1104 125 0 1893 1434.8 -0.3998247613384 0.757950343 -0.3998247613384
11 1648 408 1112 288 0 1759.7 1635.8 -0.105333125169772 0.929590271 -0.105333125169772
12 1624 325 1112 61 0 1673.3 1366.2 -0.292527426241131 0.816470448 -0.292527426241131
13 1576 2996 1184 2951 0 3887.3 4863.4 0.323196802656859 1.251099735 0.323196802656859
14 1512 207 1128 55 0 1478.4 1375.6 -0.103975640835569 0.930465368 -0.103975640835569
15 1560 4163 1176 356 0 4845.6 1809.4 -1.4211639380088 0.37341093 -1.4211639380088
16 1520 629 1128 463 0 1834.7 1863.6 0.0225480546618979 1.015751894 0.0225480546618979
17 1552 9024 1160 11346 0 9703.3 13630.7 0.490312270588524 1.4047489 0.490312270588524
18 1520 125 1128 99 0 1415 1426.5 0.0116776931747551 1.008127208 0.0116776931747551
19 1528 283 1208 133 0 1553.5 1563.3 0.00907241912135366 1.006308336 0.00907241912135366
20 1560 7858 1192 41463 0 8848.4 45400.8 2.35922920879063 5.13096153 2.35922920879063

Total number of rows: 9706

Table truncated, full table size 845 Kbytes.




Supplementary data files not provided
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