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Sample GSM35936 Query DataSets for GSM35936
Status Public on Nov 24, 2004
Title LEUKEMIA_RPMI_8226
Sample type RNA
 
Channel 1
Source name Cy5-LEUKEMIA_RPMI_8226
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1032 830 552 528 0 1497.5 1342.9 -0.157204125205521 0.896761269 -0.157204125205521
2 1208 468 608 455 0 1343.8 1325.8 -0.0194552767825376 0.98660515 -0.0194552767825376
3 1032 4423 544 10472 0 5235.6 11477.7 1.13240678677301 2.192241577 1.13240678677301
4 1184 326 600 214 0 1188.2 1034.4 -0.199983512889041 0.870560512 -0.199983512889041
5 1096 43 568 4 0 840.6 775.1 -0.117037003987183 0.922079467 -0.117037003987183
6 1056 543 560 574 0 1282.7 1413.6 0.140190155660519 1.102050363 0.140190155660519
7 1104 111 568 30 0 903.6 804.1 -0.16830934051987 0.889884905 -0.16830934051987
8 1064 547 560 427 0 1287.5 1235 -0.0600613904420966 0.959223301 -0.0600613904420966
9 1088 18058 568 8566 0 20213.8 8651.5 -1.22431836679949 0.427999683 -1.22431836679949
10 1056 122 560 107 0 881.4 891.4 0.0162760649531464 1.011345587 0.0162760649531464
11 1088 83 560 56 0 870.4 828.7 -0.0708286338787675 0.952090993 -0.0708286338787675
12 1056 38 576 33 0 808.6 823.9 0.0270430389991089 1.018921593 0.0270430389991089
13 1200 4231 776 10627 0 5227.5 11846.9 1.18031653392698 2.266264945 1.18031653392698
14 1224 154 664 109 0 1067.8 997.6 -0.0981080831615067 0.934257352 -0.0981080831615067
15 1184 3018 760 2785 0 3718.2 4006.2 0.107630071985758 1.077456834 0.107630071985758
16 1224 2169 656 6325 0 3059.1 7743.1 1.33980400575624 2.531169298 1.33980400575624
17 1328 8104 840 7245 0 9192.1 8296 -0.147978599473414 0.902514115 -0.147978599473414
18 1184 208 760 186 0 1101.4 1195.6 0.118396287940774 1.08552751 0.118396287940774
19 1344 294 888 176 0 1312.5 1327.8 0.0167204343976827 1.011657143 0.0167204343976827
20 1168 7916 760 290 0 7761.5 1228.9 -2.65896797822462 0.158332796 -2.65896797822462

Total number of rows: 9706

Table truncated, full table size 822 Kbytes.




Supplementary data files not provided
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