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Sample GSM35937 Query DataSets for GSM35937
Status Public on Nov 24, 2004
Title LEUKEMIA_SR
Sample type RNA
 
Channel 1
Source name Cy5-LEUKEMIA_SR
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1408 1669 768 1042 0 2690.7 2069.9 -0.378420475217733 0.76927937 -0.378420475217733
2 1488 536 912 370 0 1596.8 1625 0.0252560928618198 1.017660321 0.0252560928618198
3 1416 7855 736 10588 0 10252.8 10239.6 -0.0018585987446322 0.998712547 -0.0018585987446322
4 1520 539 920 502 0 1656.3 1767.7 0.0939094459103729 1.067258347 0.0939094459103729
5 1608 123 1280 -72 0 1323.2 1580.3 0.256167322378164 1.194301693 0.256167322378164
6 1416 2431 688 457 0 3269.2 1347.4 -1.2787594366221 0.412149761 -1.2787594366221
7 1624 792 1352 2327 0 2237.5 3972.5 0.828159536860968 1.775418994 0.828159536860968
8 1448 1856 672 3995 0 3253.7 4739.2 0.542562308690102 1.45655715 0.542562308690102
9 1632 20114 1328 30492 0 25514.7 27119.9 0.0880231797261882 1.062912752 0.0880231797261882
10 1424 224 648 174 0 1182.1 1145.9 -0.0448709372172939 0.969376533 -0.0448709372172939
11 1616 249 1224 135 0 1466.4 1728.4 0.237158445194752 1.178668849 0.237158445194752
12 1416 82 664 130 0 1059.7 1122.4 0.08293101703262 1.059167689 0.08293101703262
13 1408 1913 640 3833 0 3258.4 4558.9 0.484522044827246 1.399122269 0.484522044827246
14 1560 159 1656 -18 0 1373.4 2050.2 0.57801278481785 1.492791612 0.57801278481785
15 1424 3876 640 591 0 4734.7 1378 -1.7806971290182 0.291042727 -1.7806971290182
16 1560 1945 1768 2912 0 3475.2 4720.1 0.441721416465908 1.358223987 0.441721416465908
17 1648 6885 776 5262 0 8971.2 5743.1 -0.643471291764452 0.640170769 -0.643471291764452
18 1432 81 648 59 0 1062.3 1007 -0.0771275665809631 0.947943142 -0.0771275665809631
19 1640 126 752 87 0 1280.8 1156.8 -0.146905755655931 0.903185509 -0.146905755655931
20 1432 12230 648 201 0 13071.3 887.4 -3.88067427493823 0.067889192 -3.88067427493823

Total number of rows: 9706

Table truncated, full table size 830 Kbytes.




Supplementary data files not provided

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