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Sample GSM35939 Query DataSets for GSM35939
Status Public on Nov 24, 2004
Title MELANOMA_M14
Sample type RNA
 
Channel 1
Source name Cy5-MELANOMA_M14
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1112 3298 648 2796 0 3853.2 3941.6 0.0327243054275008 1.02294197 0.0327243054275008
2 1456 471 640 310 0 1477.4 1239.1 -0.253767859904518 0.838703127 -0.253767859904518
3 1144 11512 656 10202 0 11024.8 12464.5 0.177072527693554 1.130587403 0.177072527693554
4 1456 800 632 417 0 1774.3 1333.8 -0.411707607725276 0.751733078 -0.411707607725276
5 1104 143 656 26 0 923.4 921 -0.00375457561013395 0.99740091 -0.00375457561013395
6 1192 2593 648 2924 0 3296.2 4101.7 0.315418194909715 1.244372308 0.315418194909715
7 1168 600 688 344 0 1355 1346.5 -0.00907862213063792 0.993726937 -0.00907862213063792
8 1160 2822 672 1320 0 3374.8 2350.4 -0.521895706177626 0.696456086 -0.521895706177626
9 1176 30029 672 21603 0 30631.9 22691.7 -0.432870159006431 0.740786566 -0.432870159006431
10 1144 454 664 312 0 1203.6 1295.8 0.10648705144928 1.076603523 0.10648705144928
11 1136 269 656 151 0 1037.2 1093.1 0.0757312774536372 1.053895102 0.0757312774536372
12 1160 231 672 134 0 1026.7 1092 0.0889581659226843 1.063601831 0.0889581659226843
13 1160 5738 648 5612 0 6204.3 6960 0.165818858875146 1.121802621 0.165818858875146
14 1528 304 608 129 0 1361.3 991.9 -0.456718453133339 0.72864174 -0.456718453133339
15 1168 4194 640 1374 0 4623.4 2335.7 -0.985099200045025 0.505190985 -0.985099200045025
16 1544 3643 600 2772 0 4545.8 3847.7 -0.240537893883582 0.846429671 -0.240537893883582
17 1200 5345 672 4948 0 5885.5 6249.7 0.0866219551514355 1.061880894 0.0866219551514355
18 1176 210 624 119 0 1023.1 1006.6 -0.0234566614864805 0.983872544 -0.0234566614864805
19 1232 249 680 107 0 1093.8 1065.6 -0.0376829803527005 0.974218321 -0.0376829803527005
20 1176 11236 640 428 0 10801.9 1227.2 -3.13784280126085 0.113609643 -3.13784280126085

Total number of rows: 9706

Table truncated, full table size 823 Kbytes.




Supplementary data files not provided
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