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Sample GSM35940 Query DataSets for GSM35940
Status Public on Nov 24, 2004
Title MELANOMA_MALME_3M
Sample type RNA
 
Channel 1
Source name Cy5-MELANOMA_MALME_3M
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1088 6225 960 5784 0 7560.2 6523.5 -0.212778191024702 0.862873998 -0.212778191024702
2 1104 606 1104 606 0 1632.3 1791.4 0.134181277261203 1.097469828 0.134181277261203
3 1072 6642 944 8273 0 8233 8636 0.0689450170305313 1.04894935 0.0689450170305313
4 1096 424 1104 544 0 1434.1 1746.7 0.284486215995961 1.217976431 0.284486215995961
5 1072 126 840 62 0 1061.2 1018.3 -0.0595339263306808 0.959574067 -0.0595339263306808
6 1072 2180 936 2919 0 3356.1 3735.4 0.154477035959758 1.113018086 0.154477035959758
7 1088 664 840 531 0 1646.4 1458.9 -0.174433890503717 0.88611516 -0.174433890503717
8 1080 2365 936 1702 0 3507.8 2590.8 -0.437168845266773 0.738582587 -0.437168845266773
9 1080 23408 848 25675 0 25485.1 25485.3 1.13222262526659e-005 1.000007848 1.13222262526659e-005
10 1080 178 920 184 0 1128.2 1231 0.125807919775395 1.091118596 0.125807919775395
11 1072 300 856 328 0 1244.5 1305.3 0.0688151926242868 1.048854962 0.0688151926242868
12 1112 63 944 23 0 1043 1089.4 0.0627946150305761 1.044487057 0.0627946150305761
13 1056 1537 856 4491 0 2680.2 5173.1 0.948688419414508 1.930117155 0.948688419414508
14 1168 122 928 138 0 1156.3 1189.3 0.0405969280269038 1.028539306 0.0405969280269038
15 1040 2941 816 1004 0 4003.2 1809.9 -1.14524370754304 0.452113309 -1.14524370754304
16 1152 1180 952 3092 0 2378.7 3964.6 0.737001983669904 1.666708706 0.737001983669904
17 1120 3880 720 3253 0 5199.8 3820.4 -0.444732436364839 0.734720566 -0.444732436364839
18 1032 163 792 163 0 1061 1075.6 0.0197170037796851 1.013760603 0.0197170037796851
19 1136 164 752 105 0 1153.1 966.2 -0.255123875273623 0.837915185 -0.255123875273623
20 1032 6956 776 668 0 8215.9 1404 -2.54887568542274 0.170888156 -2.54887568542274

Total number of rows: 9706

Table truncated, full table size 827 Kbytes.




Supplementary data files not provided
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