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Sample GSM35942 Query DataSets for GSM35942
Status Public on Nov 24, 2004
Title MELANOMA_SK_MEL2
Sample type RNA
 
Channel 1
Source name Cy5-MELANOMA_SK_MEL2
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 776 867 736 1779 0 1530 2700.8 0.819855156100924 1.765228758 0.819855156100924
2 752 563 944 356 0 1181.2 1447.2 0.293011051208557 1.225194717 0.293011051208557
3 768 6619 712 8711 0 7416.4 9385.6 0.339729918923521 1.265519659 0.339729918923521
4 744 378 928 195 0 993.8 1267.8 0.351299725801471 1.275709398 0.351299725801471
5 1008 44 688 8 0 913.8 801.3 -0.189535965197541 0.876887722 -0.189535965197541
6 776 2798 688 4586 0 3459 5449.4 0.655742378786452 1.575426424 0.655742378786452
7 992 229 688 254 0 1076 1068.9 -0.00955118857333454 0.993401487 -0.00955118857333454
8 776 2695 688 1634 0 3296.4 2445 -0.431056851221581 0.741718238 -0.431056851221581
9 976 21268 680 12594 0 22732.9 12988.5 -0.807546910293241 0.571352533 -0.807546910293241
10 776 265 672 206 0 908.1 1006.5 0.148424090817119 1.10835811 0.148424090817119
11 960 194 696 128 0 1008 943.3 -0.095707066123767 0.935813492 -0.095707066123767
12 776 78 672 129 0 741.5 922.5 0.315102218832493 1.244099798 0.315102218832493
13 808 2873 584 6711 0 3579.5 7501.8 1.06747872097055 2.095767565 1.06747872097055
14 784 77 600 60 0 747.6 760.1 0.0239226649759532 1.016720171 0.0239226649759532
15 808 3162 592 492 0 3701.8 1162.5 -1.67099623419775 0.314036415 -1.67099623419775
16 800 1383 600 2734 0 2071.9 3512.8 0.761667066339818 1.695448622 0.761667066339818
17 1024 4151 616 3999 0 5032.1 4746.1 -0.0844180947104953 0.943164881 -0.0844180947104953
18 816 85 600 167 0 782.3 883.3 0.175181546666123 1.129106481 0.175181546666123
19 1024 95 616 56 0 972.2 773.5 -0.32985184165166 0.795618186 -0.32985184165166
20 824 8104 624 207 0 8475.3 875.4 -3.27525014951482 0.103288379 -3.27525014951482

Total number of rows: 9706

Table truncated, full table size 809 Kbytes.




Supplementary data files not provided
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