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Sample GSM35943 Query DataSets for GSM35943
Status Public on Nov 24, 2004
Title MELANOMA_SK_MEL5
Sample type RNA
 
Channel 1
Source name Cy5-MELANOMA_SK_MEL5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 968 1545 624 993 0 2400.6 1692.7 -0.504068729469917 0.705115388 -0.504068729469917
2 1120 702 832 218 0 1602.8 1193.6 -0.4252749734663 0.744696781 -0.4252749734663
3 960 7517 632 6721 0 9583.1 6504.3 -0.559098621864673 0.678726091 -0.559098621864673
4 1120 576 888 802 0 1558.7 1838.8 0.238421289369055 1.179701033 0.238421289369055
5 976 10028 592 10002 0 12825.5 9089.4 -0.496758100483139 0.708697517 -0.496758100483139
6 952 2814 640 2707 0 3944.1 3195.9 -0.303473862958234 0.810298928 -0.303473862958234
7 976 636 592 708 0 1432.8 1462.6 0.0296980252282774 1.020798437 0.0296980252282774
8 960 2026 648 2027 0 2994.2 2667.7 -0.16657415522739 0.890955848 -0.16657415522739
9 984 18456 600 23617 0 24866.3 18932.4 -0.393334548071536 0.761367795 -0.393334548071536
10 984 243 632 171 0 986.6 998.6 0.0174416193564039 1.012162984 0.0174416193564039
11 992 238 600 108 0 976.5 891.8 -0.130899844058243 0.913261649 -0.130899844058243
12 1000 90 616 30 0 851.7 826.7 -0.0429814636021038 0.970646941 -0.0429814636021038
13 920 1801 512 4356 0 2861.6 4628.7 0.693785036620513 1.617521666 0.693785036620513
14 1224 116 632 97 0 1076.4 907.5 -0.246244748467051 0.843088071 -0.246244748467051
15 928 3499 512 585 0 4290.7 1131.8 -1.9225939898401 0.263779803 -1.9225939898401
16 1288 4980 672 2666 1 6736.4 3105.9 0.461062288 -1.11696642770702
17 952 4042 536 3526 0 5361.7 3783.4 -0.503007185922132 0.705634407 -0.503007185922132
18 944 59 504 67 0 775 739 -0.0686219461618659 0.953548387 -0.0686219461618659
19 944 166 528 90 0 865.9 792.2 -0.128335720380143 0.914886246 -0.128335720380143
20 952 8844 504 397 0 9888.1 892.6 -3.46960761659779 0.090270123 -3.46960761659779

Total number of rows: 9706

Table truncated, full table size 814 Kbytes.




Supplementary data files not provided
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