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Sample GSM35947 Query DataSets for GSM35947
Status Public on Nov 24, 2004
Title NSCLC_EKVX
Sample type RNA
 
Channel 1
Source name Cy5-NSCLC_EKVX
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1264 7018 1392 5345 0 7740.2 7208.5 -0.102671760541117 0.931306685 -0.102671760541117
2 1568 608 2160 193 0 1953.6 2620.9 0.423927203410976 1.341574529 0.423927203410976
3 1248 6241 1352 5205 0 6989.9 7025.2 0.00726748219568932 1.005050144 0.00726748219568932
4 1576 317 2184 -124 0 1676.2 2326.4 0.472904876180338 1.387901205 0.472904876180338
5 1344 11 1296 -158 0 1143.5 1348.5 0.237899155474089 1.179274158 0.237899155474089
6 1208 2488 1176 1177 0 3404 2554.8 -0.414020680744823 0.75052879 -0.414020680744823
7 1328 694 1296 562 0 1785.7 2103.8 0.236507833567601 1.178137425 0.236507833567601
8 1208 2663 1208 879 0 3553 2273.8 -0.643932325506016 0.639966226 -0.643932325506016
9 1320 19602 1256 24299 0 18977.9 28172.9 0.5699877164579 1.484510931 0.5699877164579
10 1224 234 1208 -36 0 1240.7 1377.2 0.150583770681093 1.110018538 0.150583770681093
11 1320 268 1224 222 0 1373.9 1671.3 0.282693720711229 1.21646408 0.282693720711229
12 1224 57 1216 -107 0 1073 1324 0.303253046341632 1.233923579 0.303253046341632
13 1216 2228 824 3681 0 3211.3 4831.4 0.589283852557445 1.504499735 0.589283852557445
14 1304 168 960 67 0 1239.8 1219.4 -0.0239359582571331 0.983545733 -0.0239359582571331
15 1208 4909 840 3862 0 5744 5007.4 -0.1979940448238 0.871761838 -0.1979940448238
16 1312 1300 992 2096 0 2397.3 3364.6 0.489024539938197 1.403495599 0.489024539938197
17 1224 4864 680 3131 0 5725.6 4052.2 -0.498721503960767 0.707733687 -0.498721503960767
18 1168 126 776 61 0 1059.9 1021.8 -0.0528153135644644 0.964053213 -0.0528153135644644
19 1248 150 680 70 0 1142.2 918 -0.315249231811993 0.803712134 -0.315249231811993
20 1176 7800 776 492 0 8338.6 1364.9 -2.61100993219237 0.163684551 -2.61100993219237

Total number of rows: 9706

Table truncated, full table size 830 Kbytes.




Supplementary data files not provided
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