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Sample GSM35950 Query DataSets for GSM35950
Status Public on Nov 24, 2004
Title NSCLC_NCI_H226
Sample type RNA
 
Channel 1
Source name Cy5-NSCLC_NCI_H226
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1176 2970 480 1751 0 3392 2726.9 -0.314874373947765 0.803920991 -0.314874373947765
2 1200 1052 480 750 0 1640 1689 0.0424735136034412 1.029878049 0.0424735136034412
3 1176 5311 472 6176 0 5799.7 7435.8 0.35850969023913 1.282100798 0.35850969023913
4 1192 688 472 574 0 1320.8 1488.8 0.172737935137366 1.127195639 0.172737935137366
5 1200 137 424 87 0 842.5 810.9 -0.0551526731047243 0.962492582 -0.0551526731047243
6 1160 5659 456 3513 0 5918.1 4573.2 -0.371930061063428 0.77274801 -0.371930061063428
7 1224 1023 432 612 0 1608.5 1458.4 -0.141329469913971 0.906683245 -0.141329469913971
8 1152 4231 456 1472 0 4434.9 2340.1 -0.922331393603995 0.52765564 -0.922331393603995
9 1224 26408 432 25340 0 28061.3 25377.7 -0.145020523702403 0.904366512 -0.145020523702403
10 1168 350 456 200 0 981.1 1015 0.0490076300577211 1.034553053 0.0490076300577211
11 1208 379 424 208 0 1026.3 977.2 -0.0707267417246465 0.952158238 -0.0707267417246465
12 1168 100 448 80 0 797.9 839.1 0.0726348078552937 1.051635543 0.0726348078552937
13 1192 4320 408 2921 0 4681.1 3919.9 -0.256030734469899 0.837388648 -0.256030734469899
14 1192 159 424 131 0 856.1 875.8 0.0328221232301599 1.02301133 0.0328221232301599
15 1176 5977 408 4112 0 6282.8 5146.1 -0.287928164184341 0.819077481 -0.287928164184341
16 1200 2592 424 1993 0 3100 2956.5 -0.0683779390313242 0.953709677 -0.0683779390313242
17 1224 6105 400 2685 0 6292.4 3593.2 -0.80834114420268 0.571038078 -0.80834114420268
18 1168 107 408 95 0 799.9 801.7 0.00324282197583718 1.002250281 0.00324282197583718
19 1224 104 400 64 0 831 741.5 -0.16440178370089 0.892298436 -0.16440178370089
20 1168 11729 416 186 0 10358.8 749.5 -3.78878458965478 0.072353941 -3.78878458965478

Total number of rows: 9706

Table truncated, full table size 825 Kbytes.




Supplementary data files not provided
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