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Sample GSM35956 Query DataSets for GSM35956
Status Public on Nov 24, 2004
Title OVARIAN_OVCAR3
Sample type RNA
 
Channel 1
Source name Cy5-OVARIAN_OVCAR3
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1024 1997 584 2093 0 2991.4 2703.5 -0.145992479272784 0.903757438 -0.145992479272784
2 1048 747 640 773 0 1627.3 1558.7 -0.0621369606863468 0.957844282 -0.0621369606863468
3 1008 5479 592 5084 0 6773.5 5435.9 -0.317382579330796 0.802524544 -0.317382579330796
4 1032 516 616 566 0 1365.9 1339.6 -0.0280495842421389 0.980745296 -0.0280495842421389
5 1032 119 592 101 0 928 859.5 -0.110627165380946 0.926185345 -0.110627165380946
6 1008 2579 600 4037 0 3680.8 4518.9 0.295952269666219 1.227695066 0.295952269666219
7 1048 528 608 595 0 1395.2 1358.9 -0.0380326512638812 0.973982225 -0.0380326512638812
8 1016 1494 592 5112 0 2542.8 5630.3 1.14679380215664 2.214212679 1.14679380215664
9 1040 26537 584 23863 0 28982.1 23261.8 -0.317199396765441 0.802626449 -0.317199396765441
10 1016 179 592 194 0 976 962.4 -0.0202445049383829 0.986065574 -0.0202445049383829
11 1032 258 592 287 0 1075.8 1054 -0.0295350276699552 0.97973601 -0.0295350276699552
12 1016 79 592 90 0 879.3 849.3 -0.050081218115191 0.965881952 -0.050081218115191
13 920 2301 552 5520 0 3321.5 5888.4 0.82604076291935 1.772813488 0.82604076291935
14 960 15 560 8 0 773.5 716 -0.11144170375056 0.925662573 -0.11144170375056
15 920 3523 552 2253 0 4457.5 2795.9 -0.672922037044959 0.627234997 -0.672922037044959
16 960 -40 560 1 0 728.5 708.5 -0.04016111925238 0.972546328 -0.04016111925238
17 984 4867 536 3620 0 6050.4 4019 -0.590193946780335 0.664253603 -0.590193946780335
18 912 22 552 -16 0 738.9 677.5 -0.125158182422649 0.916903505 -0.125158182422649
19 976 132 552 123 0 889.8 840.5 -0.0822332788260259 0.944594291 -0.0822332788260259
20 912 -7 568 7 0 716.7 726 0.0186001942117602 1.012976141 0.0186001942117602

Total number of rows: 9706

Table truncated, full table size 815 Kbytes.




Supplementary data files not provided
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