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Sample GSM35960 Query DataSets for GSM35960
Status Public on Nov 24, 2004
Title OVARIAN_SKOV3
Sample type RNA
 
Channel 1
Source name Cy5-OVARIAN_SKOV3
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1576 1090 864 3083 0 2323.4 4529 0.96295498737969 1.949298442 0.96295498737969
2 1664 618 952 666 0 1731.3 2132.6 0.300757656332726 1.23179114 0.300757656332726
3 1576 9344 848 9383 0 11137.9 10030.8 -0.15104057275188 0.900600652 -0.15104057275188
4 1664 402 944 347 0 1488.1 1792.3 0.268340661467437 1.204421746 0.268340661467437
5 1448 13 800 43 0 1016.6 1211.6 0.253161347616272 1.191815857 0.253161347616272
6 1576 5257 848 5631 0 6624.7 6682.7 0.0125759859997593 1.008755113 0.0125759859997593
7 1464 947 808 1207 0 1911 2542.1 0.411693005748041 1.330245945 0.411693005748041
8 1576 3809 848 3193 0 5010.9 4342.7 -0.206477454929298 0.866650701 -0.206477454929298
9 1472 28520 808 19872 0 31842.3 19478.3 -0.709076776493067 0.611711466 -0.709076776493067
10 1568 305 856 413 0 1328.2 1789.5 0.430084140310126 1.347312152 0.430084140310126
11 1472 207 792 260 0 1163.1 1518.6 0.38476677186616 1.305648697 0.38476677186616
12 1552 84 856 87 0 1132.1 1362.8 0.26757245374248 1.203780585 0.26757245374248
13 1896 3933 784 4502 0 5560.2 5541.5 -0.00486023217534954 0.996636812 -0.00486023217534954
14 1960 96 832 73 0 1426.9 1304 -0.129940361832447 0.913869227 -0.129940361832447
15 1880 2920 792 3656 0 4460 4787.1 0.102108233132058 1.073340807 0.102108233132058
16 1968 1927 840 2661 0 3472 3927.5 0.177844327337422 1.131192396 0.177844327337422
17 1808 4153 760 3449 0 5608.1 4473.9 -0.325979065005601 0.797756816 -0.325979065005601
18 1880 26 800 53 0 1318.8 1232.8 -0.0972870256265141 0.934789202 -0.0972870256265141
19 1800 -25 744 51 0 1230.1 1147.2 -0.100658674099519 0.932607105 -0.100658674099519
20 1880 9869 808 160 0 10298.5 1104.3 -3.22123016206511 0.107229208 -3.22123016206511

Total number of rows: 9706

Table truncated, full table size 827 Kbytes.




Supplementary data files not provided

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