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Sample GSM35963 Query DataSets for GSM35963
Status Public on Nov 24, 2004
Title RENAL_786_0
Sample type RNA
 
Channel 1
Source name Cy5-RENAL_786_0
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) fostel@niehs.nih.gov
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1216 8061 1168 6014 0 9474.8 7032 -0.430160420677079 0.742179254 -0.430160420677079
2 1184 839 1072 744 0 1889 1944.8 0.0419990969540306 1.029539439 0.0419990969540306
3 1224 8367 1176 10580 0 9916.7 11369.9 0.197287548607034 1.146540684 0.197287548607034
4 1184 565 1064 492 0 1635.3 1664.1 0.0251868045450942 1.017611447 0.0251868045450942
5 1168 79 1040 95 0 1173.7 1205.9 0.0390465766091838 1.027434609 0.0390465766091838
6 1200 3583 1168 3058 0 4686.2 4313.3 -0.119626465955825 0.920425931 -0.119626465955825
7 1168 1091 1056 1983 0 2133.9 3217.1 0.592268212160714 1.507615165 0.592268212160714
8 1216 2780 1192 2511 0 3871.1 3822.5 -0.0182270747978717 0.987445429 -0.0182270747978717
9 1176 29685 1048 29979 0 32270.4 29671.9 -0.121114149530764 0.919477292 -0.121114149530764
10 1224 329 1184 252 0 1459 1528.5 0.0671366693966492 1.047635367 0.0671366693966492
11 1176 391 1056 396 0 1471.5 1546.3 0.0715327037773193 1.050832484 0.0715327037773193
12 1224 146 1168 141 0 1291.2 1388.9 0.105230246000242 1.075666047 0.105230246000242
13 1128 2276 1016 2469 0 3270.6 3627.1 0.149261194559985 1.109001406 0.149261194559985
14 1200 192 1080 148 0 1312.1 1302.7 -0.0103727945608305 0.992835912 -0.0103727945608305
15 1112 7013 1016 6111 0 8236.6 7030.5 -0.228421632059033 0.85356822 -0.228421632059033
16 1208 1199 1072 1464 0 2266 2693.8 0.249494881563756 1.188790821 0.249494881563756
17 1080 7279 896 4824 0 8361.9 5718 -0.548320170670354 0.683815879 -0.548320170670354
18 1136 224 1024 175 0 1282 1272 -0.0112975913162385 0.992199688 -0.0112975913162385
19 1096 267 920 204 0 1284.1 1193.1 -0.106042589650497 0.929133245 -0.106042589650497
20 1160 9858 1056 502 0 10737.6 1598.7 -2.7477004200937 0.14888802 -2.7477004200937

Total number of rows: 9706

Table truncated, full table size 840 Kbytes.




Supplementary data files not provided
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