|
| Status |
Public on Jan 29, 2021 |
| Title |
S2 iPSC, 8w, rep1 |
| Sample type |
SRA |
| |
|
| Source name |
dopaminergic neuronal culture
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: S2
status: patient
timepoint: 8 weeks
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
RNeasy Mini Kit (Qiagen)
TruSeq RNA Library Prep Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
BGISEQ-500 |
| |
|
| Data processing |
Illumina base calling, demultiplexing and FASTQ conversion with bcl2fastq v2.20.0
alignment to GRCh38 genome using STAR v2.6.0c
reads counted on GENCODE 27 gene models with htseq-count 0.9.1
Genome_build: GRCh38
Supplementary_files_format_and_content: htseq-count output, two-column text file with Ensembl gene identifier and read count columns
|
| |
|
| Submission date |
Feb 11, 2019 |
| Last update date |
Jan 30, 2021 |
| Contact name |
Petar Glazar |
| Organization name |
Max Delbrück Center for Molecular Medicine
|
| Department |
Systems Biology of Gene Regulatory Elements
|
| Lab |
Rajewsky lab
|
| Street address |
Robert Rössle Str. 10 (H. 87)
|
| City |
Berlin |
| ZIP/Postal code |
13092 |
| Country |
Germany |
| |
|
| Platform ID |
GPL23227 |
| Series (2) |
| GSE126358 |
Defective metabolic programming impairs early neuronal morphogenesis in neural cultures and an organoid model of Leigh syndrome [polyA RNA-seq] |
| GSE126360 |
Defective metabolic programming impairs early neuronal morphogenesis in neural cultures and an organoid model of Leigh syndrome |
|
| Relations |
| BioSample |
SAMN10909280 |
| SRA |
SRX5358197 |
