GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM360103

Query DataSets for GSM360103

Status

Public on Jan 15, 2009

Title

heart_KO_rep3

Sample type

RNA

Source name

Heart, KO3

Organism

Mus musculus

Characteristics

Heart RNA

Biomaterial provider

Harlan

Extracted molecule

total RNA

Extraction protocol

Trizol extraction

Label

Biotin

Label protocol

Ambion MessageAmp II-biotin enhanced kit (manufacturer's recommendations)

Hybridization protocol

Performed according to the manufacturer's (Affymetrix) recommendations

Scan protocol

Performed according to the manufacturer's (Affymetrix) recommendations

Description

Heart, KO3

Data processing

Raw intensities from the CEL files were analyzed using Affymetrix Power Tool (APT, version 1.8.5) to generate robust multi-array average intensity in log2 scale for each probe set. The perfect match intensities for each probe set were corrected for background and quantile-normalized using a robust fit of linear models.

Submission date

Jan 13, 2009

Last update date

Jan 14, 2009

Contact name

Masaki Ieda

E-mail(s)

mieda@gladstone.ucsf.edu

Phone

415-734-2880

Organization name

Gladstone Institute

Street address

1650 Owens street,

City

San Francisco

State/province

ZIP/Postal code

94404

Country

USA

Platform ID

GPL6246

Series (2)

GSE14411	Gene expression in b1-integrin wild-type and knockout mouse heart
GSE14414	Gene expression in mouse heart

Data table header descriptions
ID_REF
VALUE	log2Intensity

Data table
ID_REF	VALUE
10473562	4.017
10385500	6.186
10593927	7.667
10457733	8.984
10476889	8.354
10438425	4.677
10442238	5.573
10539444	6.069
10424411	9.837
10565355	2.746
10362379	7.49
10461640	6.784
10398100	5.751
10517791	4.704
10578690	8.482
10442236	6.893
10399760	12.294
10418038	6.903
10578922	8.075
10442786	5.511

Total number of rows: 28767

Table truncated, full table size 420 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM360103.CEL.gz	4.4 Mb	(ftp)(http)	CEL
Processed data included within Sample table