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Sample GSM361395 Query DataSets for GSM361395
Status Public on Jan 17, 2009
Title CGNP_P6_wt_rep2
Sample type SRA
 
Source name Purified GNPs from cerebellum
Organism Mus musculus
Characteristics Wild-type (C57BL/6), age day 6 (P6)
genotype: WT; Tissue: CGNP; Age: P6
Growth protocol Standard mouse facility
Extracted molecule total RNA
Extraction protocol Total RNA extraction by Trizol
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description Barcode used in pool: 5MLF
Raw data file: CSHL_FC11273_8_Medullo_6.fastq
Data processing The reads were deconvoluted by barcode, collapsed to unique sequences, aligned to the genome and annotated. Read-counts for miRNA sequences were cubic-spline normalized then log-transformed. The R-project software (http://www.R-project.org), including Bioconductor were used for data analysis.
 
Submission date Jan 16, 2009
Last update date Mar 04, 2023
Contact name Fedor Karginov
E-mail(s) karginov@ucr.edu
Organization name UC Riverside
Department MCSB
Street address 900 University Ave
City Riverside
State/province California
ZIP/Postal code 92521
Country USA
 
Platform ID GPL9185
Series (1)
GSE14470 MicroRNA profiling in mouse medulloblastomas and normal cerebellar tissues
Relations
BioSample SAMN02195463

Data table header descriptions
SEQUENCE
COUNT Read-counts for miRNA sequences were cubic-spline normalized then log-transformed

Data table
SEQUENCE COUNT
mmu-let-7a (main) 2.709786558
mmu-let-7a (other) 0.11090933
mmu-let-7b (main) 3.706753613
mmu-let-7b (other) 0.11090933
mmu-let-7c (main) 3.857729384
mmu-let-7c (other) 0.516009896
mmu-let-7c$mmu-let-7a (main) 0.11090933
mmu-let-7c$mmu-let-7a (other) 0.11090933
mmu-let-7c$mmu-let-7a$mmu-let-7c$mmu-let-7a (main) 1.204450027
mmu-let-7d (main) 2.733150588
mmu-let-7d (other) 1.491843976
mmu-let-7e (main) 2.026545811
mmu-let-7e (other) 0.11090933
mmu-let-7f (main) 3.156971864
mmu-let-7f (other) 0.11090933
mmu-let-7g (main) 2.504607838
mmu-let-7g (other) 0.11090933
mmu-let-7i (main) 2.927835327
mmu-let-7i (other) 0.11090933
mmu-mir-1 (main) 0.11090933

Total number of rows: 528

Table truncated, full table size 16 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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