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Sample GSM363919 Query DataSets for GSM363919
Status Public on Feb 04, 2009
Title 121-IS
Sample type RNA
 
Source name breast cancer biopsy
Organism Homo sapiens
Characteristics DCIS epithelium, tumor grade:II
Treatment protocol laser capture microdissected
Growth protocol fresh frozen primary breast cancer biopsy
Extracted molecule total RNA
Extraction protocol Picopure RNA extraction kit (Arcturus BioScience, Inc.)
Label biotin
Label protocol Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
 
Hybridization protocol Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
Scan protocol GeneChips were scannned using GeneChip Scanner 3000.
Description breast cancer
Data processing Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
 
Submission date Jan 23, 2009
Last update date Feb 04, 2009
Contact name Xiao-Jun Ma
E-mail(s) xiao-jun.ma@biotheranostics.com
Organization name bioTheranostics, Inc.
Street address 11025 Roselle St, Suite 200
City San Diego
State/province CA
ZIP/Postal code CA, 92121
Country USA
 
Platform ID GPL1352
Series (1)
GSE14548 Gene Expression Profiling of Tumor Microenvironment during Breast Cancer Progression

Data table header descriptions
ID_REF
VALUE RMA signals in log2 scale.

Data table
ID_REF VALUE
1053_3p_at 1.71880645
117_3p_at 2.581286934
1494_3p_f_at 3.061958544
1552275_3p_s_at 1.532666741
1552281_3p_at 4.131177789
1552296_3p_at 2.091460181
1552302_3p_at 2.260054393
1552311_3p_a_at 3.583887266
1552321_3p_a_at 1.323251985
1552340_3p_at 2.15498224
1552343_3p_s_at 3.011524325
1552354_3p_at 3.477630982
1552476_3p_s_at 2.705052876
1552480_3p_s_at 1.046209725
1552504_3p_a_at 3.045988167
1552518_3p_s_at 1.260723151
1552528_3p_at 2.592406178
1552535_3p_at 3.233712725
1552566_3p_at 1.87893247
1552575_3p_a_at 2.620231771

Total number of rows: 61359

Table truncated, full table size 1891 Kbytes.




Supplementary file Size Download File type/resource
GSM363919.CEL.gz 3.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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