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Sample GSM363932 Query DataSets for GSM363932
Status Public on Feb 04, 2009
Title 148-N
Sample type RNA
 
Source name breast cancer biopsy
Organism Homo sapiens
Characteristics normal epithelium
Treatment protocol laser capture microdissected
Growth protocol fresh frozen primary breast cancer biopsy
Extracted molecule total RNA
Extraction protocol Picopure RNA extraction kit (Arcturus BioScience, Inc.)
Label biotin
Label protocol Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
 
Hybridization protocol Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
Scan protocol GeneChips were scannned using GeneChip Scanner 3000.
Description breast cancer
Data processing Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
 
Submission date Jan 23, 2009
Last update date Feb 04, 2009
Contact name Xiao-Jun Ma
E-mail(s) xiao-jun.ma@biotheranostics.com
Organization name bioTheranostics, Inc.
Street address 11025 Roselle St, Suite 200
City San Diego
State/province CA
ZIP/Postal code CA, 92121
Country USA
 
Platform ID GPL1352
Series (1)
GSE14548 Gene Expression Profiling of Tumor Microenvironment during Breast Cancer Progression

Data table header descriptions
ID_REF
VALUE RMA signals in log2 scale.

Data table
ID_REF VALUE
1053_3p_at 1.751713398
117_3p_at 2.885249939
1494_3p_f_at 2.873383337
1552275_3p_s_at 1.702814052
1552281_3p_at 4.221894771
1552296_3p_at 2.120990735
1552302_3p_at 3.900643982
1552311_3p_a_at 3.231449593
1552321_3p_a_at 1.314755506
1552340_3p_at 2.273651914
1552343_3p_s_at 3.039828383
1552354_3p_at 3.28216007
1552476_3p_s_at 2.43359311
1552480_3p_s_at 1.077308604
1552504_3p_a_at 3.390566895
1552518_3p_s_at 1.10181265
1552528_3p_at 2.943533387
1552535_3p_at 3.457254651
1552566_3p_at 1.813491554
1552575_3p_a_at 2.769063269

Total number of rows: 61359

Table truncated, full table size 1892 Kbytes.




Supplementary file Size Download File type/resource
GSM363932.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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