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Sample GSM363944 Query DataSets for GSM363944
Status Public on Feb 04, 2009
Title 178-N
Sample type RNA
 
Source name breast cancer biopsy
Organism Homo sapiens
Characteristics normal epithelium
Treatment protocol laser capture microdissected
Growth protocol fresh frozen primary breast cancer biopsy
Extracted molecule total RNA
Extraction protocol Picopure RNA extraction kit (Arcturus BioScience, Inc.)
Label biotin
Label protocol Biotinylated cRNA were prepared after two-rounds of T7-based amplification using the RiboAmp kit (Arcturus BioScience)
 
Hybridization protocol Hybridization, washing and staining performed per manufacturer's instructions (Affymetrix)
Scan protocol GeneChips were scannned using GeneChip Scanner 3000.
Description breast cancer
Data processing Expression measures were extracted using the RMA algorithm with default parameters for background subtraction and quantile normalization.
 
Submission date Jan 23, 2009
Last update date Feb 04, 2009
Contact name Xiao-Jun Ma
E-mail(s) xiao-jun.ma@biotheranostics.com
Organization name bioTheranostics, Inc.
Street address 11025 Roselle St, Suite 200
City San Diego
State/province CA
ZIP/Postal code CA, 92121
Country USA
 
Platform ID GPL1352
Series (1)
GSE14548 Gene Expression Profiling of Tumor Microenvironment during Breast Cancer Progression

Data table header descriptions
ID_REF
VALUE RMA signals in log2 scale.

Data table
ID_REF VALUE
1053_3p_at 1.970554925
117_3p_at 2.702838716
1494_3p_f_at 3.0509815
1552275_3p_s_at 1.695214324
1552281_3p_at 4.488984434
1552296_3p_at 1.653901713
1552302_3p_at 2.426461569
1552311_3p_a_at 3.622252764
1552321_3p_a_at 1.400685111
1552340_3p_at 2.174786446
1552343_3p_s_at 3.594440332
1552354_3p_at 3.494668824
1552476_3p_s_at 2.484451509
1552480_3p_s_at 1.195128491
1552504_3p_a_at 3.494668824
1552518_3p_s_at 1.29267287
1552528_3p_at 2.796102802
1552535_3p_at 3.939923207
1552566_3p_at 2.138669215
1552575_3p_a_at 3.365177295

Total number of rows: 61359

Table truncated, full table size 1891 Kbytes.




Supplementary file Size Download File type/resource
GSM363944.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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