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Sample GSM36489 Query DataSets for GSM36489
Status Public on Apr 01, 2005
Title Nor:HIF2a rep 1
Sample type RNA
 
Channel 1
Source name HIF2a transfectant
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Normoxia 16hs
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 44963
Comparison of HIF2a transfected cells with untreated cells
Array Print: Hs-OperonV2-vB1.1p9-042203
cell_line: HEK293T
 
Submission date Nov 29, 2004
Last update date May 18, 2006
Contact name Victoria Wang
E-mail(s) wangv@mail.nih.gov
Phone 301-402-3630
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2020 Differential Gene Up-regulation by HIF-1a and HIF-2a in HEK293T.

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 0.033 1.023 1 1 1 332 151 100 53 468 177 178 84 0 0.033
1174364_1 -0.251 0.840 1 1 2 1803 507 96 48 2763 566 164 57 0 -0.251
1175152_1 0.245 1.185 1 1 3 3057 744 104 76 3369 626 180 104 0 0.245
1175940_1 0.877 1.836 1 1 4 6875 1697 105 121 4912 1168 195 105 0 0.877
1176716_1 0.896 1.861 1 1 5 5133 573 94 40 3630 538 166 48 0 0.896
1177504_1 0.841 1.792 1 1 6 9740 3412 107 170 7074 2408 196 145 0 0.841
1178580_1 -0.127 0.916 1 1 7 2357 848 108 169 3344 1178 203 146 0 -0.127
1179356_1 0.236 1.178 1 1 8 899 255 96 46 1038 260 166 57 0 0.236
1180144_1 0.272 1.207 1 1 9 5628 772 95 44 6014 909 151 49 0 0.272
1180932_1 -1.117 0.461 1 1 10 217 85 93 39 491 126 147 47 0 -1.117
1181708_1 -0.298 0.813 1 1 11 460 163 97 39 711 158 140 47 0 -0.298
1182496_1 -1.201 0.435 1 1 12 145 55 94 39 289 54 139 43 0 -1.201
1183572_1 0.033 1.023 1 1 13 837 1075 89 39 1067 1047 132 38 0 0.033
1184348_1 -0.318 0.802 1 1 14 290 123 85 36 455 127 128 36 0 -0.318
1185136_1 -0.590 0.664 1 1 15 234 146 85 35 414 102 127 39 0 -0.590
1185924_1 -0.572 0.673 1 1 16 236 102 84 41 419 115 130 38 0 -0.572
1186700_1 0.192 1.143 1 1 17 2299 498 83 38 2649 501 168 64 0 0.192
1187488_1 0.146 1.106 1 1 18 822 275 87 40 1071 198 221 59 0 0.146
1188564_1 0.048 1.034 1 1 19 6221 912 85 38 7745 1290 154 52 0 0.048
1189340_1 -0.405 0.755 1 1 20 408 148 85 42 679 174 132 40 0 -0.405

Total number of rows: 21794

Table truncated, full table size 1473 Kbytes.




Supplementary data files not provided
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