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Sample GSM365204 Query DataSets for GSM365204
Status Public on Jul 01, 2009
Title M031
Sample type RNA
 
Source name Whole blood from patient with septicemic melioidosis
Organism Homo sapiens
Characteristics Age: 49
Gender: M
Ethnicity: Not Hispanic or Latino
Race: Asian
Illness: Sepsis/Melioidosis
Treatment: Fortum, Bactrim, Trazocin
Pathogen: B.pseudomallei
Extracted molecule total RNA
Extraction protocol Tempus Spin Isolation Kit
Label biotin
Label protocol Biotinylated cRNA were generated following manufacturer protocols using the Illumina TotalPrep Amplification Kit from Ambion
 
Hybridization protocol HumanHT-12 Expression BeadChip
Scan protocol Illumina BeadScan Version 3.5.49.29917 (This information is in the .XML file)
Description The subject was infected with B.pseudomallei
Data processing The data were analysed using BeadStudio version 3.1.3.0 using the average chip normalization method.
 
Submission date Jan 28, 2009
Last update date May 29, 2009
Contact name Damien Chaussabel
E-mail(s) DChaussabel@benaroyaresearch.org
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL6947
Series (1)
GSE13015 Genomic Transcriptional Profiling Identifies a Blood Biomarker Signature for the Diagnosis of Septicemic Melioidosis

Data table header descriptions
ID_REF Illumina probe set identifier
VALUE Illumina-calculated Signal intensity
Detection Illumina detection call

Data table
ID_REF VALUE Detection
ILMN_1762337 0.6471169 0.4018445
ILMN_2055271 13.11766 0.02239789
ILMN_1736007 7.371209 0.09354414
ILMN_2383229 14.39854 0.0171278
ILMN_1806310 4.07138 0.2055336
ILMN_1779670 -4.028063 0.7615283
ILMN_2321282 7.321111 0.09486166
ILMN_1671474 3.870215 0.2187088
ILMN_1772582 0.1616226 0.4400527
ILMN_1735698 2.838741 0.2542819
ILMN_1653355 14.78165 0.01581028
ILMN_1717783 -3.852523 0.7523057
ILMN_1705025 2.938349 0.2490119
ILMN_1814316 -2.905057 0.6916996
ILMN_2359168 -0.8780555 0.5256917
ILMN_1731507 -0.7214783 0.5125165
ILMN_1787689 0.04691605 0.4519104
ILMN_1745607 -4.291958 0.7812912
ILMN_2136495 5.82588 0.1330698
ILMN_1668111 -6.236543 0.8906456

Total number of rows: 48803

Table truncated, full table size 1486 Kbytes.




Supplementary file Size Download File type/resource
GSM365204.xls.gz 3.1 Mb (ftp)(http) XLS
Processed data included within Sample table

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